RNA id: XR_005639538.1


Basic Information

Item Value
RNA id XR_005639538.1
length 1036
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120560938
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14497781 ~ 14499057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTACCAACAATGGCGTCAAAACAGAAGGGCCAAGTTCCTGTGTCAGTTTACCTTGTAGATGGCTGACCGTCACCTGTCCGAAAGGCAATACACTTTTTGCAGGTGGTGACGCCTGAAAGCCAGAACGGCGACAGGTCAGCTGCACATTGTTGTGAGCAAGGGAACCGTTACTCAACCTTTAAAATGCCCCAAATAACCGCTTCCAGTATGACCGGAAGATATGAGAGCAGAGCGGCGGTATGTTAACTAATTTTGGTTTGGTTACAGCCACATATTACAAGCCCAATGTGCCTCTTAAGTGTAGCTTGGGATTTTTAAAACCGCTCAAATTGTgaaattgacttgactttatTTTCCCAACCAAGAGGTTCCCAATGTCCTAAATACATCCCTGAAAGTTGGCCTTTTAGCCTGCCTTTTTCCATGCTCCAACAAAGTACACAATGAAGACATATAACTTGAGGAAAGTTATAAAATCTTACATTAGAGGACTAGTGGGAAACTATTGTGATTGTAAACTCACATTATACTTTGTTTACCTTTTGCAGGAAACGTTCAGCGTTGGATAAAAATAGCCACCTTTAGGAGGTTTGTCTGGTAACTATGAGTGAAAGAGTGGTGGGTGTTGTAGAGCTCCTCTTAAACGTCTGCTAATGgatcttgttttctttttcatctccTAGAATCGGTGGGGAGCCAGATGGGCGGCCGGTGAGGAGGGCAGAGCTCGAGGCAAGGAACAGAGCCTGCCCTCCTCACCTCCGGAGCTGTTATCCTGCTGAGCTAGACGTTAGTAACGAGGAACACCGcagcccgggttcgaatccgaccccgtggccctttgctgcatgttgtccctcctctctctctctctccctttcctaTCTTCTAGCTATTCTGTTGAATTTTAAAGGCCATAAAAAGCCCAATAAATGAACTAGTTGACCACTTGAGTAGCAAATGCACTGTATTGATTtagtgcttttatccaaagcactTCACAATTTGGCTCTTATTCACCACtattccccacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639559.1 lncRNA upstream 25609 14469197 ~ 14472189 (+) True LOC120561032
TU82334 lncRNA upstream 25697 14469213 ~ 14472101 (+) False LOC120561032
XR_005639561.1 lncRNA upstream 32073 14465003 ~ 14465725 (+) True LOC120561034
TU82320 lncRNA upstream 93626 14403633 ~ 14404172 (+) True G61450
TU82319 lncRNA upstream 95036 14402055 ~ 14402762 (+) True G61449
TU82340 lncRNA downstream 123 14499180 ~ 14499434 (+) True G61468
TU82392 lncRNA downstream 177080 14676137 ~ 14677372 (+) True G61513
TU82398 lncRNA downstream 200468 14699525 ~ 14754056 (+) True G61514
XR_005639594.1 lncRNA downstream 256393 14755450 ~ 14762495 (+) True LOC120561401
TU82458 lncRNA downstream 527384 15026441 ~ 15027400 (+) True G61539
XM_039803999.1 mRNA upstream 43552 14450851 ~ 14454246 (+) True pla2g1b
XM_039804211.1 mRNA upstream 52646 14437825 ~ 14445152 (+) False prkab1b
XM_039804210.1 mRNA upstream 52646 14438024 ~ 14445152 (+) True prkab1b
XM_039803816.1 mRNA upstream 64498 14431388 ~ 14433300 (+) False LOC120560925
XM_039802548.1 mRNA upstream 68366 14405145 ~ 14429432 (+) True msi1b
XM_039803809.1 mRNA downstream 49622 14548679 ~ 14555480 (+) True cfap77
XM_039803808.1 mRNA downstream 49623 14548680 ~ 14555480 (+) False cfap77
XM_039803810.1 mRNA downstream 57332 14556389 ~ 14563699 (+) True barhl1a
XM_039803267.1 mRNA downstream 127564 14626621 ~ 14642212 (+) True LOC120560602
XM_039803269.1 mRNA downstream 127594 14626651 ~ 14642211 (+) False LOC120560602
TU82322 other upstream 63201 14431330 ~ 14434597 (+) True LOC120560925
TU82315 other upstream 105220 14389603 ~ 14392578 (+) True c6h12orf43
TU82226 other upstream 178292 14317539 ~ 14319506 (+) True G61390
TU82227 other upstream 178292 14317539 ~ 14319506 (+) False G61390
TU82219 other upstream 213927 14283417 ~ 14283871 (+) True G61383
TU82404 other downstream 256468 14755525 ~ 14762489 (+) False LOC120561401
TU82405 other downstream 256468 14755525 ~ 14762549 (+) False LOC120561401
XR_005639550.1 other downstream 275456 14774513 ~ 14786109 (+) False surf4l
XR_005639549.1 other downstream 275457 14774514 ~ 14786109 (+) False surf4l
XR_005639552.1 other downstream 275486 14774543 ~ 14786109 (+) False surf4l

Expression Profile