RNA id: XR_005639582.1


Basic Information

Item Value
RNA id XR_005639582.1
length 134
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC120561317
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13903363 ~ 13904658 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCAGCAATCAGGCTCACTGGACTTActTTTCAGATCAGTTTATGCCTTTGCATCTTGCTGTTCCAGTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGactgagaagaaACTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639584.1 lncRNA upstream 78129 13812459 ~ 13825234 (+) False LOC120561319
TU82107 lncRNA upstream 88331 13812112 ~ 13815032 (+) True LOC120561319
TU82084 lncRNA upstream 216451 13686631 ~ 13686912 (+) True G61259
TU82083 lncRNA upstream 219157 13683996 ~ 13684206 (+) True G61258
TU82080 lncRNA upstream 222498 13680213 ~ 13680865 (+) True G61255
XR_005639583.1 lncRNA downstream 35 13904693 ~ 13905340 (+) True LOC120561318
TU82166 lncRNA downstream 156264 14060922 ~ 14061171 (+) True G61332
TU82211 lncRNA downstream 347598 14252256 ~ 14253343 (+) False LOC120560400
TU82212 lncRNA downstream 357497 14262155 ~ 14262869 (+) True G61376
TU82213 lncRNA downstream 375474 14280132 ~ 14281656 (+) False LOC120560400
XM_039804375.1 mRNA upstream 714 13869682 ~ 13902649 (+) True LOC120561313
XM_039804373.1 mRNA upstream 257013 13567559 ~ 13646350 (+) True adgrd2
XM_039804374.1 mRNA upstream 257859 13567559 ~ 13645504 (+) False adgrd2
XM_039804576.1 mRNA upstream 537153 13349141 ~ 13366210 (+) False lhx2b
XM_039802081.1 mRNA downstream 40380 13945038 ~ 13961157 (+) True LOC120559997
XM_039802082.1 mRNA downstream 40380 13945038 ~ 13961156 (+) False LOC120559997
XM_039804110.1 mRNA downstream 81573 13986231 ~ 14000271 (+) True atad1a
XM_039804269.1 mRNA downstream 242912 14147570 ~ 14188917 (+) True piwil2
XM_039802181.1 mRNA downstream 294097 14198755 ~ 14211704 (+) False LOC120560074
TU81938 other upstream 979527 12921147 ~ 12923836 (+) False G61139
TU81939 other upstream 979527 12921147 ~ 12923836 (+) True G61139
TU81647 other upstream 1976762 11926183 ~ 11926601 (+) True G60897
XR_005639563.1 other upstream 3150923 10748116 ~ 10752440 (+) False LOC120561144
TU82171 other downstream 202825 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 236784 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 378759 14283417 ~ 14283871 (+) True G61383
TU82226 other downstream 412881 14317539 ~ 14319506 (+) True G61390
TU82227 other downstream 412881 14317539 ~ 14319506 (+) False G61390