RNA id: TU70376


Basic Information

Item Value
RNA id TU70376
length 328
RNA type TUCP
GC content 0.52
exon number 1
gene id LOC113547245
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4947137 ~ 4956467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGAACTCCACTCATCGTGATTGCTGAGAAGAAGACGTGGAAAGAAGCCCTgaagttctgcagacagaatcACGTGGACCTGGTTTCTGTTTACTCGCAGGAAATGCAGGACTGGGTGGAAGTAGTCACTAAAAATGCTTCCACTAACATGTGGATTGGCCTGCGTCACACCTGCGCTCTGGGCTTCTGGTACTGGGTGAGAGGAGAGATGATCTGCTACCAAAACTGGGCTCCAGGTAACGGAACCGGAGTGGAGGATTGTGGTGATGTGGAGAGAACCGGAGCGGTGCTGTCTGAGAGTAAGAAGTGGGTCAGCCTGCCACAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70375 lncRNA upstream 2537 4952371 ~ 4952598 (+) True G59479
TU70374 lncRNA upstream 4484 4950300 ~ 4950651 (+) True G59478
TU70199 lncRNA upstream 256340 4677167 ~ 4698795 (+) False G59329
TU70198 lncRNA upstream 274896 4677167 ~ 4680239 (+) True G59329
TU70216 lncRNA upstream 283675 4670980 ~ 4671460 (+) True G59343
TU70379 lncRNA downstream 2600 4958062 ~ 4958314 (+) True G59483
TU70396 lncRNA downstream 38027 4993489 ~ 5014813 (+) False G59492
TU70430 lncRNA downstream 56458 5011920 ~ 5017802 (+) True G59521
TU70431 lncRNA downstream 56458 5011920 ~ 5017802 (+) False G59521
XR_003404806.2 lncRNA downstream 308554 5264016 ~ 5266014 (+) True LOC113547270
XM_034303596.1 mRNA upstream 20217 4922651 ~ 4934918 (+) True LOC117597060
XM_026947564.2 mRNA upstream 41513 4896968 ~ 4913622 (+) True LOC113547295
XM_026947547.2 mRNA upstream 60712 4879800 ~ 4894423 (+) True si:ch211-188c16.1
XM_034303595.1 mRNA upstream 88724 4805654 ~ 4866411 (+) True LOC113547214
XM_034303594.1 mRNA upstream 165882 4774186 ~ 4789253 (+) True LOC113547242
XM_034303597.1 mRNA downstream 89666 5045128 ~ 5050075 (+) True LOC117597061
XM_026947512.2 mRNA downstream 196853 5152315 ~ 5159166 (+) False LOC113547260
XM_026947510.2 mRNA downstream 196855 5152317 ~ 5159166 (+) True LOC113547260
XM_034304014.1 mRNA downstream 196858 5152320 ~ 5178390 (+) False LOC113547260
XM_026947514.2 mRNA downstream 196858 5152320 ~ 5169408 (+) False LOC113547260
TU70239 other upstream 246737 4707442 ~ 4708398 (+) True G59366
XR_004578071.1 other upstream 302014 4650477 ~ 4653121 (+) True LOC117597167
XR_003404798.2 other upstream 402097 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578033.1 other upstream 948794 4005153 ~ 4006341 (+) True LOC117597099
TU69947 other upstream 1102568 3850423 ~ 3852567 (+) False LOC113545588
TU70397 other downstream 18733 4974195 ~ 5008133 (+) True G59492
XR_004578077.1 other downstream 224100 5179562 ~ 5188046 (+) False LOC113547261
TU70896 other downstream 624682 5580144 ~ 5596126 (+) False LOC113547291
trnat-ugu_1 other downstream 1183838 6139300 ~ 6139372 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 1188103 6143565 ~ 6143637 (+) False trnat-ugu_2

Expression Profile