RNA id: TU199596


Basic Information

Item Value
RNA id TU199596
length 516
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G168608
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19887315 ~ 19887830 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGATACTGACCTCAAAATTTACCTCAGAATTAAGGAATGCCAACTTTGTTTCACAACAGAGAGCAATCAAAAATGTCTGAAcgtaatattattacacacaagCAGCCTGCCACAAGGACATTTGAGAAGTTGCTCTCATCACTATAGCAACCACAACATGCAATAGGCACTCTTACATGAATGTAGCCTTTTAAACAAGCAATTTTAgacttcaaattattttttggtCAGTGAGACAACAAGCctgttctcctttttttttttttgtttaagtgcGTGATTAGTGTCCTAATGGATCACTATAGTTAAGCCCTATAACGCTGGAGCACTTCCTCTCCACTCATCTCCCCCTTTTACATTCATCCTGCTATGATGGACCACCATTGATTATATGTCCCAAGAGTTGGTCTGTAATGCCTGCTAATGCACTCATCTCTTCCTATTACATTTGTTCCGCATCTGTGATGGTCATTCTACTCATAGCAGCTCgctttaaattcatttaaattcctG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199462 lncRNA downstream 120362 19766754 ~ 19766953 (-) True G168493
TU199433 lncRNA downstream 121588 19763846 ~ 19765727 (-) True G168466
XR_003403882.2 lncRNA downstream 199206 19687231 ~ 19688109 (-) True LOC113538910
XR_004578988.1 lncRNA downstream 203169 19683239 ~ 19684146 (-) True LOC117598314
TU199395 lncRNA downstream 206646 19679497 ~ 19680669 (-) True LOC117598328
TU199660 lncRNA upstream 35275 19923105 ~ 19924187 (-) True G168661
TU199664 lncRNA upstream 51986 19939816 ~ 19940040 (-) True G168665
TU199749 lncRNA upstream 211297 20099127 ~ 20100572 (-) True G168747
TU199752 lncRNA upstream 218383 20106213 ~ 20106858 (-) True G168750
TU199758 lncRNA upstream 257437 20145267 ~ 20148736 (-) True G168756
XM_026933817.2 mRNA downstream 7980 19873422 ~ 19879335 (-) True bub1bb
XM_026934335.2 mRNA downstream 20150 19840371 ~ 19867165 (-) False LOC113538902
XM_026934336.2 mRNA downstream 20150 19840371 ~ 19867165 (-) True LOC113538902
XM_034308329.1 mRNA downstream 30776 19840371 ~ 19856539 (-) False LOC113538902
XM_026933769.2 mRNA downstream 112228 19772800 ~ 19775087 (-) True LOC113538599
XM_026934191.2 mRNA upstream 3764 19891594 ~ 19908747 (-) True zgc:162989
XM_034307953.1 mRNA upstream 14138 19901968 ~ 19908343 (-) False zgc:162989
XM_026934190.2 mRNA upstream 14138 19901968 ~ 19908249 (-) False zgc:162989
XM_034307799.1 mRNA upstream 126649 20014479 ~ 20018717 (-) False srp14
XM_026934420.2 mRNA upstream 126649 20014479 ~ 20018716 (-) False srp14
TU199357 other downstream 292538 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 920702 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1039619 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1504860 18378897 ~ 18382455 (-) False gdf7
TU198372 other downstream 1571108 18305743 ~ 18316207 (-) False G167566
TU199706 other upstream 125749 20013579 ~ 20018694 (-) True srp14
TU199915 other upstream 434934 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 677099 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 845100 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 926731 20814561 ~ 20817216 (-) False grem1b

Expression Profile