RNA id: LOC117598896


Basic Information

Item Value
RNA id LOC117598896
length 363
RNA type V_segment
GC content 0.50
exon number 2
gene id LOC117598896
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21693183 ~ 21693634 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgatctctacatccctactgctgctgctgctggcagccgtacactgtgttcactgtgttgagctgatccagaccggatccacagtattaacccctggtcagtcaatgactctgacctgtaAAGTGTCTGGATATTCAGTAACTGATAGCAGCTACTGCACAGCCTGGatacgacaacctgcaggaaaagctctggagtggatcgGAGAGATATGGGGTGGTGGTGGCACTGACTACAGTGAGAAACTAAAGAGCAGGTTTCAGGTTTCCAGAGACACGTCCAgcagcacagtaacattaacagggcagaagatgcagactgaagacacagctgtgtattactgcgctcgtgttgcacactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254775 lncRNA downstream 47289 21645119 ~ 21645894 (-) True G215168
TU254530 lncRNA downstream 58319 21634658 ~ 21634864 (-) True G214980
TU254528 lncRNA downstream 61316 21628129 ~ 21631867 (-) True G214978
TU254527 lncRNA downstream 71262 21620678 ~ 21621921 (-) True G214977
TU254526 lncRNA downstream 76351 21616602 ~ 21616832 (-) True G214976
XR_004579406.1 lncRNA upstream 15019 21708653 ~ 21709394 (-) False LOC117598971
TU254945 lncRNA upstream 29837 21723471 ~ 22134451 (-) True G215194
TU254878 lncRNA upstream 64922 21758556 ~ 21762489 (-) False G215182
TU254980 lncRNA upstream 328452 22022086 ~ 22078908 (-) True G215217
TU254780 lncRNA upstream 331849 22025483 ~ 22082843 (-) True G215171
XM_026936343.2 mRNA downstream 79308 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 79308 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 312967 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 326071 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 633092 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 706051 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 859090 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 859995 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 859996 22553630 ~ 22582102 (-) False topaz1
LOC117598776 other downstream 1607 21685697 ~ 21691576 (-) True LOC117598776
LOC117598954 other downstream 8538 21684024 ~ 21684645 (-) True LOC117598954
LOC113546932 other downstream 9750 21672162 ~ 21683433 (-) True LOC113546932
LOC117598868 other downstream 16376 21675638 ~ 21676807 (-) True LOC117598868
LOC117598919 other downstream 19853 21672822 ~ 21673330 (-) True LOC117598919
LOC117598877 other upstream 1238 21694872 ~ 21695353 (-) True LOC117598877
TU254934 other upstream 1263 21694897 ~ 21695359 (-) False LOC117598877
TU254876 other upstream 3026 21696660 ~ 21803188 (-) False G215182
TU254837 other upstream 4079 21697713 ~ 21796496 (-) False G215182
TU254838 other upstream 4079 21697713 ~ 21973084 (-) False G215182

Expression Profile