RNA id: TU254520


Basic Information

Item Value
RNA id TU254520
length 332
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G214970
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21615882 ~ 21616213 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACACTTCCCTGTTACATTTTGCTCTACTTGCGCCACAGGCGTTtcacttcaccatgtcaatgtATCAGAGTCTTGataaaatgttgacatttctcGATAGGGCAGAACTGTGGAAGTCTGGCTTATAGTGGATATTACtgtgtaagtaaagtaaaaaaaattggtcATTTGTAATTATCTAAGGAGGATTCTGATATTCCCAGCAGTTTAGTCTTGTTTCTGCAATCCCTCTGCCTTCACATTCCATAAAAGAGTTAATGGCTACCTGTTTGCTGGGTAAGTTTTAAAACTTTGCTAATTCTATGACTGTTATCAATATTTCACACCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254525 lncRNA downstream 767 21614884 ~ 21615115 (-) True G214975
TU254506 lncRNA downstream 57710 21516860 ~ 21558172 (-) True G214958
TU254496 lncRNA downstream 59226 21515927 ~ 21556656 (-) False LOC117598823
TU254499 lncRNA downstream 59226 21519093 ~ 21556656 (-) False LOC117598823
TU254507 lncRNA downstream 98274 21516860 ~ 21517608 (-) False G214958
TU254526 lncRNA upstream 389 21616602 ~ 21616832 (-) True G214976
TU254527 lncRNA upstream 4465 21620678 ~ 21621921 (-) True G214977
TU254528 lncRNA upstream 11916 21628129 ~ 21631867 (-) True G214978
TU254530 lncRNA upstream 18445 21634658 ~ 21634864 (-) True G214980
TU254775 lncRNA upstream 28906 21645119 ~ 21645894 (-) True G215168
XM_026936343.2 mRNA downstream 2007 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 2007 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 235666 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 248770 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 710513 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 783472 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 936511 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 937416 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 937417 22553630 ~ 22582102 (-) False topaz1
TU254170 other downstream 588623 21014439 ~ 21027259 (-) True fgf2
trnal-aag_9 other downstream 1202952 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 1552392 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 2167548 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 2539542 19076269 ~ 19076340 (-) True trnat-cgu_6
LOC113546932 other upstream 55949 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 56609 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 59425 21675638 ~ 21676807 (-) True LOC117598868
TU254923 other upstream 60058 21676271 ~ 22215359 (-) False G215187
LOC117598954 other upstream 67811 21684024 ~ 21684645 (-) True LOC117598954

Expression Profile