RNA id: TU254527


Basic Information

Item Value
RNA id TU254527
length 1188
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G214977
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21620678 ~ 21621921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTCACACGTGTTCTTGTGCATATCGGTTTATCTCGCGTGTTCTCGTGCATATCGGCTCGGCTCTCCTCGCGCCCATGTTCTCGTGCAccttgaagtttttttttttccctcgtgCACTTTTTCTGCTCACAGCTTCTTGTCATGTTGAGCTCTGCGGCCATTTTCCCACAGCACCACCACGCTGGCAGAGCAAACGCTTCAACTCCCCAGCCTGAGTGAAGACATTctcacaaattaattaattaaataaataaaataataagaaagcaGCTGTTtctttgttcatgtttaaatgTCTTGTTAGAAAGTGTCGACACGCGCGAgacaaatacaaaagaaaaacttttaacTCGTGTTAAAAACTGCAAATCTGAGCGTTTGTTGGACAGCTCCCAGAGTCAGGAAATAAAATCAGCCATGATGGAATGACGAGGAGAAAAAACACTCCATTTTGGATGTAAACGTTTTTACGACATATCATATAAGTTAAGTAGttgttgttttctcttttaaattaaagtgtcgactttttaaagaaaggaaaaaactcTTAAGAAACTTTAGAAAGAATTTCCGGCCTCAAAAATCACGTCCAATTAAAAGTCGCTGTCCAGctcggacacacacacacacacacacacacacacacacactcttcagcaAGCTGTTACACACCAATGTGTTGAAGTTGTGTTATAAACCCTGGCTATACCTGCTAGCTAGGGTTAGTAAACTATCTTTAGCTAGCTACTTTTCCGGAAGAAGTACATACATGACCACAacgcttttaaaaataaactagtTGTGGGGGAGATTTTTCGACGATTTTGGTGTTTTGTTGTGTCAGATATTGTACTTCCAGAGAAAAGCATTTagttgtgaagtgtgtgagagtgtgttagcCGTGGTCCTGATCTCCGTTGCTGGACAGCGCCTCTCACACACCCTGCCTCCATTTTACAAGCCTACACACTTTTACTGAACTCCGAAAAAAAAGGCGGAAAAAGTGCGATTTTCGGAGTTTAAACGTATCTTGGTTCGATAGAAAACTTACCCTGCACTTTCGTTCGACGTCTGTCGATATTTTCGAGAAGCTTCTTCGAAGTTTTAGACTCTCTCAAAACTAACTTTTCAGCTAAACTTGTTCAGGGAAGTACGAGTCTCGACGCATTCCAACACAGCGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254526 lncRNA downstream 3846 21616602 ~ 21616832 (-) True G214976
TU254520 lncRNA downstream 4465 21615882 ~ 21616213 (-) True G214970
TU254525 lncRNA downstream 5563 21614884 ~ 21615115 (-) True G214975
TU254506 lncRNA downstream 62506 21516860 ~ 21558172 (-) True G214958
TU254528 lncRNA upstream 6208 21628129 ~ 21631867 (-) True G214978
TU254530 lncRNA upstream 12737 21634658 ~ 21634864 (-) True G214980
TU254775 lncRNA upstream 23198 21645119 ~ 21645894 (-) True G215168
TU254777 lncRNA upstream 30269 21652190 ~ 22026318 (-) True G215169
XR_004579406.1 lncRNA upstream 86732 21708653 ~ 21709394 (-) False LOC117598971
XM_026936343.2 mRNA downstream 6803 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 6803 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 240462 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 253566 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 704805 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 777764 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 930803 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 931708 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 931709 22553630 ~ 22582102 (-) False topaz1
TU254170 other downstream 593419 21014439 ~ 21027259 (-) True fgf2
trnal-aag_9 other downstream 1207748 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 1557188 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 2172344 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 2544338 19076269 ~ 19076340 (-) True trnat-cgu_6
LOC113546932 other upstream 50241 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 50901 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 53717 21675638 ~ 21676807 (-) True LOC117598868
TU254923 other upstream 54350 21676271 ~ 22215359 (-) False G215187
LOC117598954 other upstream 62103 21684024 ~ 21684645 (-) True LOC117598954

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00017797 True 6464 mRNA 0.42 3 CM030131.1 23844922 ~ 23857827 (+)