RNA id: TU254528


Basic Information

Item Value
RNA id TU254528
length 3714
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G214978
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21628129 ~ 21631867 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATACTAGTACATTTTCTAAAACGCAGATTTCCTccacaaaacatttcaacaaaTCCGATGTTAGTACTTGTACCTACTATGAACTATAAAGCACTCTAGATTACATCTGTAAAAGAAATATGCTATTTCTTACATCCATATTTAAGTAAAATCTCCAAGAAACATTTATAGTAATAGTAATTCTAATCTATCCATCTAATcgaagttttattttttacaaaagaGAGTTAGATGCAGGGCAGGGGAATTTTTCCACTTTGGTATACCCAATATATAATATTgcacttaataaaaataataataataaaaaatctagtttttttttttttttttttaaagacagacATGTTGATTTAGATGGCCATGAAAATCAAGCATGGTTCTATTCCACACACATCAGATCAGTGGCACAAGGTTAGAATCATAATTCAGTTTGATGACAATTAGCAGAGAAAGCAGGAAAGAGAAAGTCAAACTAAcaacaaaaagtacaaaattaccaaaggggaaaaaaaaaaacgattgtcagaagcattaaaaaaaaaaggaaaaacaacaactggAGTGACATATACAGTGTAAAGCTCAACGTTTTTCTCCCTACCCCATATGTAGTTTGCTTGTTTAGCTTTGCACTTGAGCTACGAAGTTCACATTGCTAACAAATAAAAGAAGCTTACGGTATACAGTCCAAGGGGAACAAtgtgtgcatttcatttttggccaaactttTCTTTTAAGGAAACAAGAGCGGGAGACAGTCATAAACAGTCTTAAACAATCTTTGGACCGAATTATGAAGCTGAAAAAGAACAGAATATTCAGAATCTCCACTCGAGTGCTCTAAGATAACTTTTAAGATGAAAGTCAATGTACAAAGTAACACTTGCTTGTTTCTACATATTACGATTAATTCCCATAGGATTACATAATAAGATAATTATCAGACATGCGCTGATATCACAGTTTGCAATattatcatgattttgtgtAACAGTTCTGAGAACATTCACAGAACTTTTGTCTGATAAATGGAATTATGCAATTACCTTCTGAGAGGGATACACgcagcatttttttcttcaaatttgtCCAAAACAAGCAACCATACAAGACAGTTACCCTTAAATAAAGGCTGCTTTCTTCAGGAGTGCTAACAACAGGCCTCAGTTATccgtctttaaaaaaaaacgttgtGTGCAAATATCTTCATAggccaaactgaacaaaaaaaaattccaggcAGATTTACAAAAGCTCAGttaacgctgattttcttcatattctgGTGCACAttttgataaatgccaatcttCCAGAAATGACCAACCGCATTTATGGCACAGCTGATTgacatttagccacacccaaaaagctcacagagagctgtaaatgacaaaatgatgattAAATGGTGAAGAGTGCCTCCTAAGCACGGTGTATGCTAAATCTTCCAACTGTTGTCTCTGCAAAAAGAATGCTGAGACCTTACGTCAAGGTGACTAGAGTCAAGGCggcctttttttaaatgatagtCCAAGTCCAGCTGCCTTGAATTATGGTTACTGCTGGACACTTTTAAATGACCCAGATGACTGAAAACCTTAAGTAGAAATGAAGTCTACTTGTTCCCCTGTGTCGCAGTGTCCAGGTAATAGACATTAACCAGATGGCGATTGAGATGCCGCCTGTAGTCCATCTCCAGAGGGAACGTGCGGTCACAGAACACGCATGTGTGGCTGAGCAGTTGCGTGGGTGACGGAAGTTCTTCAGTCGGTGTTTCCGGAAGCTTCCCGTTGAGCCCGGAGTCGTAACTTACCTCCGAGGCACAGTCGCTGATGTCACTTCCTCCGTCGTGGCTGTGGATGCCCTCGTCGTCTTCACCGTCCTGAGATTTGCTACACGGAGGTTTGGACAAGTCCAGTGTTGGACTATCCGTCCCACTATCAATATCTGAAGATGTCTGTGCTTCCGCGGTGCCCTTTCCTTCAGTGGTGGCCTTCACTCTTGTGACTTTGTCTTCTGAAGACGGCTTCTCCGATAGATTTTTTGTTATGCTCAGCTCCTCAGAAGTGTGAGACACTTTCTCTGTTGAAATTTGATCTTTTATTGGGCCAGATTGCACTTTTTCAGGCTTGGAGGAACATTCCAGAGCTTTTGCTGCCTTAACCTTAACACTAACCTCCAgcttgtttgtctttctgttttgcCTGCCACTGCCCTTTGACCTCTTCACTTCTCCAGGTGTGCTCATGCTTGTGCATGGGCTGTTTGTAACCTTCGCCTTCCTGCGTTTGGCTTTCTCTGCCTGAGGAGAAGGTGCACACTCTGCTTTTTTGCGTTTCACCGTTTTCGTCTCGGCTTTCTCGCAATTCTGAGACTTCTCCATATCACAATTCACTGTTCCTGTATGTTTCTTGGTTGCTTTCCTGGCCATTTTGGAACCTTTAACATTTTCCACCTCTCTTTTCTGTACATCATATTTCTGAAGTTTGCTTTCCTtctccagcctctctctttctctccgttcctcctcctccttctgctTCAGCTCCTTCtcactcatttctctctctactctctcactttctcttctttcctcctcctctttcgctctcatttctctctccagCCTTTCCCTTTCCCTCTGttcctcctcctttttctctttctccctcatttctttctcaaccttctctctttctctccttttttcctgCTCCTTCTGCTTCAgtttcttctctctcatttctagctcaactctttctttctcctgtcGCTCTCTTGCCgttctcttttcctcctcctccctctgcttatgttctttctctttcttcattctCTCCAGACTTTCATCTTCctgcctctttctttctctcctttcctcctcctctctctgcttctgCTCCTTTGCCCTCATTTCTTTCTCCATCCTTTGAGTCTGCTGCCTCTTCTCAAGATCTGTTCTGTTTTCCTCTTCAGAACCATCATGATTTTTGGTGAGTGTCTCTTTCGTTTCCTTTGCagccttttcttcttttttagcTCGACTTTTAGTGACTCTGTCTGAAGATTTAGCAACTTTCTCTGCGTTTTTCACCTCCttgtctttctttccatcttgtTTCTCGACACAGGGGACAGTTTCTTTGATTCTCGCTTTCTTGCTGcttgtttcttttccttcatttcttGGTGCAGCTCTTTTCTCTGCTCTCTTCTCACACGATTTTTCTTTTGTGGGTTCGGAAGCGGGTTTTTTGGCACTCTCACCATCCAAATTCGTCTTTCCACTCTTTTTAATGGAGAGGTTGATGGGGCCTACGATTGAATCGGCATCCTCGGACACCTCTGCTTTTCGTCTATCCCTTGTCCTTGGTTCTGAAACTGGCTTCAAATCATCCCCGTCTGCCTTCTTCACCCTCAGCCTGACCTTGGACACGTCCATGGAGATATCTGAGCATCCCGGGTGCCTGGACTTGATGTGGTACTGCAGGTTGCATTTCTTGGATGCAGCATACTTGCAGACGGGGCAAAGAAACTGCCTTGGATTGACATGCAGCTCCACATGCTTTTTGAAGTTGCTGCGATCGGCTGTTTTGTACTGGCAGTAAGGACAGCTGAGCGGCTTGGGTCCGTTATGCACCTGCCTGGCATGACGTGTCACCTCGTGTTGATTGGCTGCCAAATAGCTGCAGCTGTCGCACTTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254527 lncRNA downstream 6208 21620678 ~ 21621921 (-) True G214977
TU254526 lncRNA downstream 11297 21616602 ~ 21616832 (-) True G214976
TU254520 lncRNA downstream 11916 21615882 ~ 21616213 (-) True G214970
TU254525 lncRNA downstream 13014 21614884 ~ 21615115 (-) True G214975
TU254499 lncRNA downstream 71473 21519093 ~ 21556656 (-) False LOC117598823
TU254530 lncRNA upstream 2791 21634658 ~ 21634864 (-) True G214980
TU254775 lncRNA upstream 13252 21645119 ~ 21645894 (-) True G215168
TU254777 lncRNA upstream 20323 21652190 ~ 22026318 (-) True G215169
XR_004579406.1 lncRNA upstream 76786 21708653 ~ 21709394 (-) False LOC117598971
TU254945 lncRNA upstream 91604 21723471 ~ 22134451 (-) True G215194
XM_026936343.2 mRNA downstream 14254 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 14254 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 247913 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 261017 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 694859 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 767818 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 920857 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 921762 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 921763 22553630 ~ 22582102 (-) False topaz1
TU254170 other downstream 600870 21014439 ~ 21027259 (-) True fgf2
trnal-aag_9 other downstream 1215199 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 1564639 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 2179795 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 2551789 19076269 ~ 19076340 (-) True trnat-cgu_6
LOC113546932 other upstream 40295 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 40955 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 43771 21675638 ~ 21676807 (-) True LOC117598868
TU254923 other upstream 44404 21676271 ~ 22215359 (-) False G215187
LOC117598954 other upstream 52157 21684024 ~ 21684645 (-) True LOC117598954

Expression Profile