RNA id: TU254777


Basic Information

Item Value
RNA id TU254777
length 1912
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G215169
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21652190 ~ 22026318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAATTTAGGTCATTTATTAAGCTTGCTTATTGGACGTAAATAGTTTTAAACCTTAAAAGACAGACTGTTGCTGGAGGTCACGTGACGCGTTAATGGCGGCGCAGCTTTGAAAAGACGCTCTCCACACCACTCACATATTTCCAGGTCTTTGAAGGATAACTAAATGCTAAATTACGTGAAATCATCGAAAATGTCGACCCAGACCACATTTGTTCATACTCAGGAGGACACACCCTCTCATTATTAAGAAGAAATTCAGGGAGTCCTCCACCGCTATCTCCCGAGCTGAGCTGGAGGGCGCCATTTTGGCCGGAATGAAACAAGCCTTGAGCGAGCAACAGACTGATTTAGACAGAATTGTTTCTGCCGCTGTTCAATCTGCCATAGATGATGTGCTGACGCCTCAGGTCTTAGATAAATAAAGCAGTCAAGTTCGGCAGCGAAACTCTTCATTTCTTCCCGGATTACAGCGCAGACACCACTAAGAAAAGGAAGGCTTTCACTGAGGTGCGGAAGAAGATGGAGACACTCGGAATTCAGTCGGTTCTCCTCTTCCATGGTCAAGGTCATCCATGAGTGTGGAGGGAAGTggtagctcagtggttaagacgttggacttttgctcagaaggttgagagttcaaatcccagcaccaccaagctgcccctgctgggcccttaaccctcagctgcttaattgtataaatgagataattgtaagtcgctctggataaaggcgtctgctaaatgctgtaactgtaaatgcagGGAGATAAAACCTCTTTCAATCGCTGTTGGAGGCCGAGCAGTATCTTCTGTCTTCACGGCCTGGGAGCGACACCGCTATAGCATCTGTGGGACTGTGTCTTCAACTGGCCCGCTGTGTTGATATGGATATGGAGCAATCCGTTACTGAGCAGAGATAAACTACACAGCCAGCGTACTGTATATGCTGTtgtaaagcatttattttatttttcttatttaccatcttattttaatattttctttggcCACAAAATAGGTTATGGACATTCTTGGTTACTGAGGTAGGTccccattttattttctttttctttaggtTACTAAATCTCTGAGCAGGCTGAGGCTTTATATAGAAATTTatgatgtgatttattttttgaatcatttttattacaatcATAAATCCTTCCCTACTCTAGTTATAGCCTAATAATCTCTAGTCAGTAGTGGTTGGGATCACACGGCGATTGAGCAGTCACGGCTCTTGTAAACTGCAGTCTTACGCTTGCCAGAGGAGTCGTAGTGTCCTGGCGGATTGCAGAGTGTCTGTACATAGTTTAGATTATGTTCATCTGCGTTCTGTTCATGGCGGCAACTGactaaaatgtacaattttctTCAAATGGTTTTCGAGGTCTGGGCTTTTCTACGCTCCCTTTTGTATTTCTGCCTTAATGAATCATACCAAAGTCCTCTTAACATCTATATATGCACCGAACGTATGTGACCGCCAATTTATGGACAATATTTCTGGAACCTTGATTCATTTCAATGACTATCACATTATTCTAGGTGCAGACTTCAATGCTTGTGTCCACCCTGAGTTAGACCGCTCTTCCACTGACCCCACGGTGGCAACGCCATCTTCAGTAGCTCTTAATAGCTTAATTGCACAGAGCTTAATCTTGCAGACCCATGGCGTAttaaaaatgctaatgctaaagcgTATCCATTTTATTCCACCCGTCACAAGTCATTTTCTAGGATTGATTATATTTTGATTGATCCCTCTTTGGTCCAACACATCGGTACTATTGATATTTTGCCTATTTTGATATCGGATCATTCACCGGTAACTTGTAATATCACTACAGGTGTCAAATTCTCTAAAGTCAATAGATAGCGCTTTAATAATACACTATTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254775 lncRNA downstream 6296 21645119 ~ 21645894 (-) True G215168
TU254530 lncRNA downstream 17326 21634658 ~ 21634864 (-) True G214980
TU254528 lncRNA downstream 20323 21628129 ~ 21631867 (-) True G214978
TU254527 lncRNA downstream 30269 21620678 ~ 21621921 (-) True G214977
TU254526 lncRNA downstream 35358 21616602 ~ 21616832 (-) True G214976
TU254985 lncRNA upstream 53844 22080162 ~ 22136007 (-) True G215221
TU254991 lncRNA upstream 95138 22121456 ~ 22133365 (-) True G215224
TU254781 lncRNA upstream 99354 22125672 ~ 22140140 (-) True G215172
TU254995 lncRNA upstream 138252 22164570 ~ 22197412 (-) True G215228
TU254864 lncRNA upstream 210649 22236967 ~ 22240962 (-) False G215182
XM_026936343.2 mRNA downstream 38315 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 38315 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 271974 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 285078 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 300408 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 373367 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 526406 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 527311 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 527312 22553630 ~ 22582102 (-) False topaz1
TU254170 other downstream 624931 21014439 ~ 21027259 (-) True fgf2
trnal-aag_9 other downstream 1239260 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 1588700 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 2203856 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 2575850 19076269 ~ 19076340 (-) True trnat-cgu_6
LOC117598917 other upstream 185032 22211350 ~ 22211895 (-) True LOC117598917
TU254896 other upstream 185085 22211403 ~ 22211898 (-) True G215183
LOC117598898 other upstream 188226 22214544 ~ 22215344 (-) True LOC117598898
LOC113546935 other upstream 189424 22215742 ~ 22217034 (-) True LOC113546935
TU254973 other upstream 190188 22216506 ~ 22217070 (-) True G215211

Expression Profile