RNA id: TU88745


Basic Information

Item Value
RNA id TU88745
length 205
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G74827
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 44484 ~ 45869 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGATCTATAAAAGCTACAACACTGATAGTTTACCTCCTTCACATTTCAGGATTCGCCCCTCTCGTTCTGTCTGTCCCTCGTAAGTACTACCTGATCCAGCAGGGGAAAACATGGAGTGATGCTCAGGCTTACTGCCGAGCCACACACACCGACCTGGCTGTCATAGAAAGTAACGAGGACATGGTCCAACTTCagactgaag

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88739 lncRNA downstream 9041 35050 ~ 35443 (-) True G74822
TU88708 lncRNA downstream 12445 18934 ~ 32039 (-) False G74815
TU88724 lncRNA downstream 17588 13659 ~ 26896 (-) False G74818
TU88725 lncRNA downstream 17588 13659 ~ 26896 (-) False G74818
TU88726 lncRNA downstream 17588 13659 ~ 26896 (-) True G74818
TU88997 lncRNA upstream 16929 62798 ~ 63288 (-) True G75037
XR_004578168.1 lncRNA upstream 38001 83870 ~ 85921 (-) False LOC117597330
TU88992 lncRNA upstream 38702 84571 ~ 85886 (-) True LOC117597330
TU88996 lncRNA upstream 284074 329943 ~ 330490 (-) False LOC113524562
TU89138 lncRNA upstream 326741 372610 ~ 374644 (-) False LOC113524348
XM_034304648.1 mRNA upstream 4437 50306 ~ 129763 (-) True LOC113524322
XM_026910531.2 mRNA upstream 50313 96182 ~ 105382 (-) False LOC113524326
XM_034304275.1 mRNA upstream 50314 96183 ~ 106080 (-) False LOC113524326
XM_034304274.1 mRNA upstream 50315 96184 ~ 106079 (-) True LOC113524326
XM_026910582.2 mRNA upstream 66310 112179 ~ 125540 (-) True LOC113524368
TU88741 other downstream 138 43731 ~ 44346 (-) True G74824
TU88709 other downstream 12445 18934 ~ 32039 (-) True G74815
TU89040 other upstream 116345 162214 ~ 162577 (-) True G75076
TU88975 other upstream 149162 195031 ~ 200718 (-) False nms
TU88976 other upstream 149162 195031 ~ 200325 (-) True nms
XR_004578164.1 other upstream 812535 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 816159 862028 ~ 864494 (-) False sox21b

Expression Profile