RNA id: TU89040


Basic Information

Item Value
RNA id TU89040
length 364
RNA type TUCP
GC content 0.51
exon number 1
gene id G75076
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 162214 ~ 162577 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAAGTTTCCTGCATCCATGCGTGACTTTTGTGGACAGCCATACTCTATCTCCGGGTTCATACTGCGGAGTGGCATTTCGACGTCTCTCTGCAAATTCTTTGTTCCTCTGAGTTGTTTGTTCAAGGTGCTGGTGTGCAACATTCCACACTTGTTCACTCCTCCTGAACCAGTCATCGACGGCAGGGGATTGGCTTTGAGAACAAGGGAGGTTGGTAACGTAGTACGCACAGGAATGGAGTTAGTTGCGTGGCTGAAAGATGTAAGGAGTTCTGGGCGTATTCTGTCCACGACAGGAACCAGGGCCAGTCCTCCTGGTTGTCAGCGCAGtatgaggtggatgggctacaacagcagaagaccac

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko03050 Proteasome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578168.1 lncRNA downstream 76293 83870 ~ 85921 (-) False LOC117597330
TU88992 lncRNA downstream 76328 84571 ~ 85886 (-) True LOC117597330
TU88997 lncRNA downstream 98926 62798 ~ 63288 (-) True G75037
TU88745 lncRNA downstream 116345 44484 ~ 45869 (-) True G74827
TU88739 lncRNA downstream 126771 35050 ~ 35443 (-) True G74822
TU88996 lncRNA upstream 167366 329943 ~ 330490 (-) False LOC113524562
TU89138 lncRNA upstream 210033 372610 ~ 374644 (-) False LOC113524348
TU89152 lncRNA upstream 254160 416737 ~ 417747 (-) True G75183
TU89173 lncRNA upstream 268942 431519 ~ 434836 (-) True G75195
TU89179 lncRNA upstream 318491 481068 ~ 481964 (-) True G75201
XM_034304300.1 mRNA downstream 5935 136834 ~ 156279 (-) True LOC113524367
XM_034304295.1 mRNA downstream 20921 138938 ~ 141293 (-) True LOC117597326
XM_034304648.1 mRNA downstream 32451 50306 ~ 129763 (-) True LOC113524322
XM_034304260.1 mRNA upstream 2173 164750 ~ 174359 (-) True LOC113524366
XM_034304299.1 mRNA upstream 34060 196637 ~ 201012 (-) False nms
XM_034304279.1 mRNA upstream 69998 232575 ~ 257446 (-) True edar
XM_034304265.1 mRNA upstream 159669 322246 ~ 354602 (-) False LOC113524317
XM_034304266.1 mRNA upstream 160886 323463 ~ 330401 (-) True LOC113524562
TU88741 other downstream 117868 43731 ~ 44346 (-) True G74824
TU88709 other downstream 130175 18934 ~ 32039 (-) True G74815
TU88975 other upstream 32454 195031 ~ 200718 (-) False nms
TU88976 other upstream 32454 195031 ~ 200325 (-) True nms
XR_004578164.1 other upstream 695827 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 699451 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 775435 938012 ~ 938203 (-) True LOC113524372

Expression Profile