RNA id: TU89179


Basic Information

Item Value
RNA id TU89179
length 616
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G75201
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 481068 ~ 481964 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caatgcttaaaatgtgtgtttatttttcataccattctgtgtaaactgtgtgaaaatcccaggagatcagcagtttctgaaatactcaaaccagctcatctttttcctcattctgatgttcgatgtgaacattaagtgaagctcttgacctgcatctgcaggattttatgcattctgccacatgattggctgattacatAACTGCAtaataaatgagcaggtgtacaggtgttcctattaaagtgaacgGTGAGTGTGTATCACATTTATATCACAAGTTCATATTGCATTACTACTTTAACATTGCTTTCAGAGCTACGCAAGTTGTGAACAAAACTTTTTAGACTTTATATTTAACACCGCACTATCTATCAGTACATCAAgactaatttattaaatatttgctaTATAGCTACATCTGATGATTGCTAATTCACGTATAAGCGTTCTATATCAATTCATACGATCAACACTATGATCATTATGGAATTCTGTCAGTTTAAGTGATAGTAACTTGTTATTTTGAAGTAATAACTCCTAATTCGAAATAATGAGTAACCAAGTCAAAATAACataGCTAAGTAGCTAAGTCGAAATAACGAGTTACCAAGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89173 lncRNA downstream 46232 431519 ~ 434836 (-) True G75195
TU89152 lncRNA downstream 63321 416737 ~ 417747 (-) True G75183
TU89138 lncRNA downstream 106424 372610 ~ 374644 (-) False LOC113524348
TU88996 lncRNA downstream 150578 329943 ~ 330490 (-) False LOC113524562
XR_004578168.1 lncRNA downstream 395147 83870 ~ 85921 (-) False LOC117597330
TU89228 lncRNA upstream 79389 561353 ~ 561963 (-) True G75240
TU89341 lncRNA upstream 148480 630444 ~ 701572 (-) True G75332
XR_004578166.1 lncRNA upstream 171189 653153 ~ 660719 (-) True LOC117597328
XR_004578165.1 lncRNA upstream 178942 660906 ~ 662091 (-) True LOC113524353
TU89360 lncRNA upstream 209116 691080 ~ 719042 (-) False tmsb4x
XM_026910557.2 mRNA downstream 22385 433287 ~ 458683 (-) False gpm6bb
XM_026910558.2 mRNA downstream 22385 435394 ~ 458683 (-) True gpm6bb
XM_026910563.2 mRNA downstream 65010 412573 ~ 416058 (-) False trappc2
XM_026910562.2 mRNA downstream 65046 412573 ~ 416022 (-) True trappc2
XM_026910564.2 mRNA downstream 106446 372567 ~ 374622 (-) True LOC113524348
XM_026910519.2 mRNA upstream 8516 490480 ~ 501207 (-) False fancb
XM_034304272.1 mRNA upstream 8516 490480 ~ 501200 (-) False fancb
XM_034304271.1 mRNA upstream 8516 490480 ~ 501200 (-) False fancb
XM_026910517.2 mRNA upstream 8516 490480 ~ 501200 (-) True fancb
XM_034304668.1 mRNA upstream 193555 675519 ~ 685478 (-) True arsh
TU88975 other downstream 280350 195031 ~ 200718 (-) False nms
TU88976 other downstream 280743 195031 ~ 200325 (-) True nms
TU89040 other downstream 318491 162214 ~ 162577 (-) True G75076
TU88741 other downstream 436722 43731 ~ 44346 (-) True G74824
TU88709 other downstream 449029 18934 ~ 32039 (-) True G74815
XR_004578164.1 other upstream 376440 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 380064 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 456048 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 663333 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 689917 1171881 ~ 1187499 (-) False lcp1

Expression Profile