RNA id: TU89228


Basic Information

Item Value
RNA id TU89228
length 611
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G75240
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 561353 ~ 561963 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTAAATTAACTCTTTATTAAGTAGCTGAAACTCTGAATAgctaataaatacacaacaaatcaacaaaaataataacttaatTCTAATAATAACTATGCAAAACTGCGTTAAAGGGACTGAGGtataatttttattactgaataatatgtaCAAGGTCTAATTGCCAAAAATATAccatatttacactttttattttatacaaaaccTCTTTACCAGGAgttatcagtttaaaaaaaaaacaggggagTACAATACAACATACACAACTCAAAAagtaaacacataaataaatattgatatagCGAATATGTTCTCCGAGAACATATACAATTTTATCAGTTTAATCCATCCCAAAGTTCTAAagttattaataaacaatatgcGCAGTAATATTCTTCATATAGAGGCTCTGTTAATCTGTTAGtggaaaatattcacaaatgttttcagtaaagGACAACAGACATGCACTTTAACGCTAGTGTAACTTTTCAAAAGTGAGGAGATGttccactgtaaaaaaaaaaaaaagttcttttgtttagtttttaacattttccagTCAAAAGCTGCTTCCACGTTTCTGAGGATACATTCATCTGTTCAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89179 lncRNA downstream 79389 481068 ~ 481964 (-) True G75201
TU89173 lncRNA downstream 126517 431519 ~ 434836 (-) True G75195
TU89152 lncRNA downstream 143606 416737 ~ 417747 (-) True G75183
TU89138 lncRNA downstream 186709 372610 ~ 374644 (-) False LOC113524348
TU88996 lncRNA downstream 230863 329943 ~ 330490 (-) False LOC113524562
TU89341 lncRNA upstream 68481 630444 ~ 701572 (-) True G75332
XR_004578166.1 lncRNA upstream 91190 653153 ~ 660719 (-) True LOC117597328
XR_004578165.1 lncRNA upstream 98943 660906 ~ 662091 (-) True LOC113524353
TU89360 lncRNA upstream 129117 691080 ~ 719042 (-) False tmsb4x
TU89361 lncRNA upstream 129117 691080 ~ 719042 (-) False tmsb4x
XM_026910519.2 mRNA downstream 60146 490480 ~ 501207 (-) False fancb
XM_034304272.1 mRNA downstream 60153 490480 ~ 501200 (-) False fancb
XM_034304271.1 mRNA downstream 60153 490480 ~ 501200 (-) False fancb
XM_026910517.2 mRNA downstream 60153 490480 ~ 501200 (-) True fancb
XM_026910557.2 mRNA downstream 102670 433287 ~ 458683 (-) False gpm6bb
XM_034304668.1 mRNA upstream 113556 675519 ~ 685478 (-) True arsh
XM_026910567.2 mRNA upstream 155447 717410 ~ 719115 (-) False tmsb4x
XM_034304669.1 mRNA upstream 158664 720627 ~ 724412 (-) True LOC113524316
XM_026910510.2 mRNA upstream 163548 725511 ~ 729048 (-) True tlr7
XM_034304257.1 mRNA upstream 167629 729592 ~ 765991 (-) False frmpd4
TU88975 other downstream 360635 195031 ~ 200718 (-) False nms
TU88976 other downstream 361028 195031 ~ 200325 (-) True nms
TU89040 other downstream 398776 162214 ~ 162577 (-) True G75076
TU88741 other downstream 517007 43731 ~ 44346 (-) True G74824
TU88709 other downstream 529314 18934 ~ 32039 (-) True G74815
XR_004578164.1 other upstream 296441 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 300065 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 376049 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 583334 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 609918 1171881 ~ 1187499 (-) False lcp1

Expression Profile