RNA id: TU89358


Basic Information

Item Value
RNA id TU89358
length 812
lncRNA type sense_over
GC content 0.39
exon number 3
gene id tmsb4x
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 691080 ~ 719115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCACCTTGCTTTCCTCTCACATCTGTTTCCTGTGCTCTCAACTACGAAATCAGCCACAAACATGTCAGACAAACCCAATCTGGAGGAAGTGACCAGCTTCGACAAGAGCAAGCTGAAGAAGACGGAGACGCAGGAGAAAAATCCTCTGCCATCAAAAGAGACTATCGAACAGGAAAAGCAGGCAGGCACATCATGAAACTTCCTATCAAGACTCCACTATGCACTGCACTGCCTTCATCTTttcaccttttctttttctaaaaatttgtttaatttcctaagacaaaaaaaaacaacaaccctAAGATGCGCTCTGATTGGACGAAACAAAACCACCATCTTGTGGCCCGTATCTccgttttgtttttaatttaaaaaaaaaaaaagaacgcaCCACTGCGAAGAATGATGGACGTGGGAGTTCATaaagaagatgaagaggaggcggggcttcagCCTCAGGGCGGGGCTGAGAGTTTGATTGACAACTTCCTGGGACTTCACTATCCAGACCCGGGCTGATTGCTTTCAGATGTTGAAAAATCATGcagtgttttgtttcattttttttttttttttaaagttgaatGTTTAAGATTATTTTGTAATCTAAAATTTAAACCTCGGAATgcacaatattttgtttatgcaAATAAACAAGAAGAGAAAACCTGTTAATCTTCTGCTGAAGGTCATGTTTCCATTTTCTTGGTGTATTCTTAGAGGAGAAATGCAGAGGAGGTGCAACGTAAAAAGacctttttaaattattgttattattattattgcataatTCGGGGTCTGGCTTTCT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89341 lncRNA downstream 15710 630444 ~ 701572 (-) True G75332
XR_004578165.1 lncRNA downstream 55191 660906 ~ 662091 (-) True LOC113524353
XR_004578166.1 lncRNA downstream 56563 653153 ~ 660719 (-) True LOC117597328
TU89228 lncRNA downstream 155319 561353 ~ 561963 (-) True G75240
TU89179 lncRNA downstream 235318 481068 ~ 481964 (-) True G75201
TU89374 lncRNA upstream 463 719505 ~ 720606 (-) True G75356
TU89386 lncRNA upstream 41310 760352 ~ 760838 (-) True G75365
TU89388 lncRNA upstream 43598 762640 ~ 762840 (-) False frmpd4
TU89390 lncRNA upstream 45253 764295 ~ 764555 (-) True G75369
TU89394 lncRNA upstream 48319 767361 ~ 772430 (-) True G75372
XM_034304668.1 mRNA downstream 31804 675519 ~ 685478 (-) True arsh
XM_026910519.2 mRNA downstream 216075 490480 ~ 501207 (-) False fancb
XM_034304669.1 mRNA upstream 1585 720627 ~ 724412 (-) True LOC113524316
XM_026910510.2 mRNA upstream 6469 725511 ~ 729048 (-) True tlr7
XM_034304257.1 mRNA upstream 10550 729592 ~ 765991 (-) False frmpd4
XM_034304255.1 mRNA upstream 10550 729592 ~ 762849 (-) False frmpd4
XM_026910507.2 mRNA upstream 10550 729592 ~ 757921 (-) False frmpd4
TU88975 other downstream 516564 195031 ~ 200718 (-) False nms
TU88976 other downstream 516957 195031 ~ 200325 (-) True nms
TU89040 other downstream 554705 162214 ~ 162577 (-) True G75076
TU88741 other downstream 672936 43731 ~ 44346 (-) True G74824
TU88709 other downstream 685243 18934 ~ 32039 (-) True G74815
XR_004578164.1 other upstream 139362 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 142986 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 218970 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 426255 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 452839 1171881 ~ 1187499 (-) False lcp1

Expression Profile