RNA id: TU89386


Basic Information

Item Value
RNA id TU89386
length 487
lncRNA type intronic
GC content 0.39
exon number 1
gene id G75365
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 760352 ~ 760838 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacaaagctccgccccccaaAACATGgcaactagagttagcatgctaagcactgtcatgacatcactttcaagctcATTTGCCTGCTTGAAAGCTGAGTtataacactgtaaacacacgaAATTTCAGCTCATACTCTTTTATGAGAACGGTCAAGAGTGTTTTCActgtcctgttttgtttttaatgagatCTAGCATCGTTAGCATTTTAAGCTACACAATAGGAAATTCAGTTGCTTGTAAACCAAATTATAACAATATCAACAGCAAAGTGACgttgctgttttttctttctttgtaattaaataaaatgtatcgACTCGATCCATTATGTAAAGCCGGCTAATCGAATGATTCAAAGCTTTATAGAGATTGTGTTTACAAGCCTGTCCAGGAGCAACATCGCTAATTCTGCATCCAGCTTCAGCCCCATCGCCAGTAATAAATTGCTCCATTATGGAAAAATGCTGCCAGggtttattctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89374 lncRNA downstream 39746 719505 ~ 720606 (-) True G75356
TU89360 lncRNA downstream 41310 691080 ~ 719042 (-) False tmsb4x
TU89361 lncRNA downstream 41310 691080 ~ 719042 (-) False tmsb4x
TU89358 lncRNA downstream 41310 717282 ~ 719042 (-) True tmsb4x
XR_004578165.1 lncRNA downstream 98261 660906 ~ 662091 (-) True LOC113524353
TU89388 lncRNA upstream 1802 762640 ~ 762840 (-) False frmpd4
TU89390 lncRNA upstream 3457 764295 ~ 764555 (-) True G75369
TU89394 lncRNA upstream 6523 767361 ~ 772430 (-) True G75372
TU89366 lncRNA upstream 35984 796822 ~ 892057 (-) True G75348
TU89458 lncRNA upstream 159058 919896 ~ 926094 (-) True LOC113524338
XM_026910507.2 mRNA downstream 2431 729592 ~ 757921 (-) False frmpd4
XM_034304254.1 mRNA downstream 2431 729592 ~ 757921 (-) False frmpd4
XM_034304258.1 mRNA downstream 3133 729592 ~ 757219 (-) False frmpd4
XM_034304256.1 mRNA downstream 5271 729592 ~ 755081 (-) True frmpd4
XM_026910510.2 mRNA downstream 31304 725511 ~ 729048 (-) True tlr7
XM_026910542.2 mRNA upstream 66443 827281 ~ 833892 (-) True dct
XM_026910560.2 mRNA upstream 100159 860997 ~ 864607 (-) True sox21b
XM_034304281.1 mRNA upstream 159998 920836 ~ 936968 (-) False LOC113524338
XM_026910548.2 mRNA upstream 159998 920836 ~ 936968 (-) False LOC113524338
XM_026910528.2 mRNA upstream 183481 944319 ~ 957738 (-) True LOC113524324
TU88975 other downstream 559634 195031 ~ 200718 (-) False nms
TU88976 other downstream 560027 195031 ~ 200325 (-) True nms
TU89040 other downstream 597775 162214 ~ 162577 (-) True G75076
TU88741 other downstream 716006 43731 ~ 44346 (-) True G74824
TU88709 other downstream 728313 18934 ~ 32039 (-) True G74815
XR_004578164.1 other upstream 97566 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 101190 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 177174 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 384459 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 411043 1171881 ~ 1187499 (-) False lcp1

Expression Profile