RNA id: XM_034304258.1


Basic Information

Item Value
RNA id XM_034304258.1
length 5446
RNA type mRNA
GC content 0.47
exon number 17
gene id frmpd4
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 729592 ~ 765991 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatgaggagtCTCTCTTTATATCCAGTGACTCACCTCACTTCAACTGAGTGCGCGTGCTACTCGGCCACAGGACCAAAGCCTCAGGCGGATGGACGTCTTCGTCTCACGGTCCTGTAGACGGATGGGACACGGTGTCCAGTAGAGACGAGCGTGACTGCTTCATCGAtcacgTCTCCCAGCCGAGTTCTCTGGAGGAAGTGCGTCTCGGGCTGGAGGGCGATAAGTTAGCGCCCCGGAAAGTTGAAATGAGACGAGACCCGGTTTTAGGCTTCGGCTTCGTGGCAGGAAGTGAAAAGCCTGTTGTAGTTCGTTCTGTCACTCCAGGTAGCGGTCCATCAGAGGGAAAACTGATTCCCGGAGATGAGATCATTATGATCAATGATGAACCAGTCAGCAGCGCCCCTAGAGAGCGAGTGATCGACCTGGTCAGGAGTTGTAAGGAGGCCATTGTGTTGACGGTTATTCAGCCGTACCCTTCGCCCAAGTCTGCCTTCATGAGTGCTGCCAAAAAGGCAAAGCTGAAATCGAACCCGGTAAAAGTTCGATTTGCCGAAGAGGTCATCGTTAATGGTCAAATTcctGAAACGGTGAAGGATAATTCGCTTCTCTTCATGCCAAATGTTCTGAAAGTGTACCTTGAAAACGGCCAGACAAAATCATTCAAGTTTGACAGCAACACCTCAATTAAGGACGTCCTACTGACGCTGCAAGAGAAGTTGTCCATTAAAAGCATTGAGCATTTTTCTCTGATGTTGGAGCAGAAGATGGAAAATTCTAACACAAAGTTGGTGCTCCTGCATGAGCAAGACATGCTAAGTCGGGTGACTCAACAACCTGGCTCGCACAagatgagatgtttatttcgcATTGCTTTTGTACCAAGGGATCCAGTGGATCTTCTCCGTCGTGACCCTGTGACCTTTGAGTATCTCTATGTGCAGaGCTGTAAGGATGTTGTTCAGGAGCGTTTCGGGTCAGAGCTGAAATATGACACAGCGCTTCGTCTCGCTGCTCTTCAGATGTACATCCTCACAATCAGCACCAAACAAACTCAGAAAGTCTCCCTCAAATACATTGAAAAAGAGTGGGGGTTGGCTCTGTTTCTTCCTCCGGCAGTTTTGTCCAGCATGAAAGAGAAGAACATCAAGAAGGCCATCGCACACATTCTGAAAACGAATCAGAACCTGGTGCCTCCTGGGAAAAAGTTGACGGCGCTGCAGGCCAAAGTTCACTACCTGAAGTATCTCACTGACCTGAGACTGTATGGAGGAAGAGTGTTTAAGTCCACACTGCTGCaagcagagaaacacacagaggtGACACTTCTAGTTGGGCCACGACATGGAATTAGCCACGTCATCAACACCAAAACCAACATGGTGGCCCTGCTGGCCGACTTCAGCCACGTTAACCGCATCGAGATGTACACAGAGGACGAGAGGAACGTCAGAGTAGAGCTCCACGTGCTCGACGTGAAGCCCATCACGCTAATAATGGAGTCCAGTGATGCAATGAATCTAGCATGCCTTACTGCGGGTTACTACAGACTGTTGGTGGATTCACGGCGCTCCATCTTTAACATGGCCAACAGCACGTCTGGCCATGATTCACGGGAAAAGCACAATTTTCAAGCGATTGAGTGGAACTATGGCTCCTGTACTGGGTGCGAGGACCACAGTGGTAGGCTCTCTGACCCAGACTCCACCCCCATGTATATCACTGAGCTCCACCAAGCGCATCGGGCAAGCAGGGGCACCTGTATGCAAACCCATGCCCACACGCAGCCCTTTTTCAAGTCTGACGATTCACCCAAGAGCGCCAAGGTGTCTTTTATATTCGGAGATGCTCCGTTGGATAGCGTGAATCCCCAGCATTTGGGTTACCAAAGGTTGATGGAGGACATTCCAGAGGTTTTGGATGATCAACGGCCACTTTATCTGCATCAGGATGACTATAAACCCTTGGATTCTTGTTTGGATATGGATGGCTTCCAGTATGGGAATCACATGGTCTACGGCGACGGTAAAATCTTTGGTACCACTGAGGGAATCGAGGAGCCGCTCCTGCATGATATCTGCTACGCCGAAACCACCGATGATGCCGAGGACGAAGACGACATTAGTTGTGAGGATGACATGTCAATGATGGCGATGGCGGATTCTCGAGAAAGAGCTCTGTCACTGCTTTCCCTGTCGGAATCTAGCGACGATATCATCGACCTGACTTCTCTTCCACCGCCACCAGAGGGAAACGATGTAGAAGACAACGATGTGCTTTTGCAGTCGCTAAACTTGGCCATAGCCGCTCCACCACCCGGATTCAGGGACAGCTCAGATGAAGATGAGCACCAAGGAGAACCAGCGAGGGAGAAAAGAAACTTGGACATCCCGGTGTCACTAATTGACTCTGTTCCGATGAACgtggacagagggacagacgaAGTGTTGGATGATGCTGTCGTTTCCACTTTGCAAGCGCTAGAAGCTTTGGCAGCCTCCGAAGATCAGTCCCACCCACAATTGGACAATAATTCAGGTGTAGAAATATCTCGATCCTATAGTCCTGAGTCTGCTTCGGATTCTGGAAATGAGACGAATTCCTCCGAAATGACAGAGAGCTCAGAGCTAGCAGCAGCTCAGAAACTCTCAGACaatccactgaaaatgtttgtgGCCACTGCTGAAGGGTATCAGACGCTGGACGCAGAGAAAACAGAGTTTCGTTTGAGGGCCATGTCTAGAAACCAGGAGGAAGAACTGAAGTCCACAGCTGTAGCTTCACGTCAGGCCCTCCATTCAGACCACTTGGAGATGGAGCCTGAAACAATGGAGACCAAATCGCTGTCTGATTACTTCAACAAAATGCACATGGATGCCATGATGGGCAAGAGACAAGGAAAAGTCGATGAGGGAGACTGCAGATTGGGAGTTGCTAGCAAAAATGAATCATCGCAAATAAAGGCAGTTGGCTCTAATGTAGAGGATGTTGTTGGGAGATACAACAATGTCAATTCAAGAGAACCTCTTCACACAGGGTTTGACCTGCAAAGGACGCCTTTTCCATTTCAGGACAAGAACATACGATCACAACAGATCCCGAACTGCAAAGCAGAGGAGCACATTTACTCTAAGACACCAAAGTGTGGCAGCTCTAACACCATAGCTCCAAGTAGTCTCAGAGGATCTCTGATGGACCTGAACACTCGCTCAGCTGCAGAAGATGCTTACTTAATCGAGCAAGCCACACACGAACAGCAAAGTAAGGTACTGTCATCTGAGAAGGAAGTGACGCGGTTGTACGATTACCACTTGCCGAAGAGGATGTCCTCGCTCCAGAGCGAAGGAATTCATTCCCTGCAGAGCTCGCAGTGCTCATCCATCGATGCGGGATGCAGTACAGGAAGCAGCAGCTGCGTGACGCCCATGGATTCACCACTCTGCACTGCCGAGAACATCCACCTGATCAATGAATCTTCTTTGAAAGGCCTCGGATACCCAAATGCAGAAGAAAAAGGATACAGTCAAAGTCCACATCGCAAACTCGTCCATCAGACTTTAGATGCCGCATTTTTACGAAAGCACCATACAACGCCTGGTACAGAGTCCAGCTTGGGACGCGAAGGATGCCAAAGGATGGCCAAGATTAGAGAAACTACAGTGTAGTGTGCTGACGATGGCGCTGAAACATAAGGCTTTTCATTTAAGTGCACCTCATCTACACCAGTCCTGGCCATTCATGCATGGCACAGACTCTTACGTGCCAAAACCAGAGGTCTGTAGAAATCTTCCCCTTCTTGGACTGACTCTCTGGTTGCCTCAGGAAGGCGGAGATGGAATTTCCCTTCAACTTCCGTGGAAAGCGTTGGCAACAGTTTTTTTCATGGAAACTATTTTGGCTCAGGGAGCTTTGTTGGAACTTTAAAAGAACCAAAAGTGTGTGCAATTCTGGACAGCTCTCGTTTAAGAAAACCCCAGCTGGTCGTTTGCATTTTTGTGATGGAAGTTGAAATTCGTCAGGCCAAGACATGCCACGATTTACCTGGTAGAAACGTGGTGAATAATCAGGCGTGATTTAGAAAGTACGACGTACCTACTGACAATTAATACGAACTTGCCCGTCCCTTTCTGAAAGCTGTACTGGTATTTTATAGTAAGAAATGAAGATGAAGTTGATCAGGTCATGGTGTGTTATAACTTGCTGGCTGGCTTTACATTGTGCGATTTTTCAGTCCACAAACAatcgtaaaagaattctttggtcgcGAGTTGAGGTCTTAATATCACCAACAGccgatttagtgccattgcGACCAAAGACAACCGTCAACAAAGTTGTGTCTTTGTgagaaagtttttaaaaaaatctcagagtgtgacaGCTAGCGAATCATGGGAATCTGTGAGTTCAGGTATGTGGAagggggcggatagcgctttcctccttGGATGAAAGCTTGTGATGCAGCAATTCAAAAAGTTgcagctggctggcttcacgtgtctcagagggagcacgtgttagccttcactctccctggatgataggagagagctggctggtgggtggaaaCTGGCAGGTGAAATTCtaacactgccagaactttgtcttTGGCTGTCATTGGTCGCAGTGACTGTCGGTGAACGCGTCACATTCTACGACTGCCAAACTCAATTcacgaccaaagaattcttCTACAAAAGCTGGGATTCAGAAAGGGAAATAATCTCTCCAACTCATAGGAAAAGTGGGCTTCTGTGTGATTTCCAGCATCTGATACTAATTAGCACTTGTTTCTGACTAAAAAGTTACTACTGCGCAGTTCTGAAGTAATGAAGTCAGTCAGGAAAGGAAAACTTTCAGCACAAGAAACCTGAAAATGATGACCCTCCCTCCTCCACTTGCTCTAACATCCCAGACTGACGACCAAAGCAGCTCCTTTTACGACACCTTTGACATTTCCGCGTGGGATTTGCAGCCATTTTGATctcattctggaaaaaaaaaaaaagaaaaggacgCCGCTGACTTTCAGCTCCTTCAAAGCCATAATTTGACCCGTgatcatcactgacatcatcacgtGGTGGTCGGTGAAATCCATTTAATTTGGCCAGCGTGCTTTGATAAAATCCATGCcttgtgtatattttatgtaatctgtaaagaaaataaattatataatacatagaatttttaaaacaggaaatCTATAATTCTTAAACCTTGGGTTATGCCTATGTTCCAGTgatgatattaaaaatatgatgtgttctGAATGTTCAGAAACAGCACACTTGCAGCTTATTTGCTTGGTTAATTATGTACAAATGCTTCAGTcgtagaatgaaaaaaaaaaaaaaacttttgcataTTTCTGAATTCCTTACATAAGTCAAATGTGGTTTATTTGCATTATCAAGCGTATTAAATATTTCGAGTTATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89374 lncRNA downstream 8986 719505 ~ 720606 (-) True G75356
TU89360 lncRNA downstream 10550 691080 ~ 719042 (-) False tmsb4x
TU89361 lncRNA downstream 10550 691080 ~ 719042 (-) False tmsb4x
TU89358 lncRNA downstream 10550 717282 ~ 719042 (-) True tmsb4x
XR_004578165.1 lncRNA downstream 67501 660906 ~ 662091 (-) True LOC113524353
TU89386 lncRNA upstream 3133 760352 ~ 760838 (-) True G75365
TU89388 lncRNA upstream 5421 762640 ~ 762840 (-) False frmpd4
TU89390 lncRNA upstream 7076 764295 ~ 764555 (-) True G75369
TU89394 lncRNA upstream 10142 767361 ~ 772430 (-) True G75372
TU89366 lncRNA upstream 39603 796822 ~ 892057 (-) True G75348
XM_026910510.2 mRNA downstream 544 725511 ~ 729048 (-) True tlr7
XM_034304669.1 mRNA downstream 5180 720627 ~ 724412 (-) True LOC113524316
XM_026910567.2 mRNA downstream 10477 717410 ~ 719115 (-) False tmsb4x
XM_034304668.1 mRNA downstream 44114 675519 ~ 685478 (-) True arsh
XM_026910517.2 mRNA downstream 228392 490480 ~ 501200 (-) True fancb
XM_026910542.2 mRNA upstream 70062 827281 ~ 833892 (-) True dct
XM_026910560.2 mRNA upstream 103778 860997 ~ 864607 (-) True sox21b
XM_034304281.1 mRNA upstream 163617 920836 ~ 936968 (-) False LOC113524338
XM_026910548.2 mRNA upstream 163617 920836 ~ 936968 (-) False LOC113524338
XM_026910528.2 mRNA upstream 187100 944319 ~ 957738 (-) True LOC113524324
TU88975 other downstream 528874 195031 ~ 200718 (-) False nms
TU88976 other downstream 529267 195031 ~ 200325 (-) True nms
TU89040 other downstream 567015 162214 ~ 162577 (-) True G75076
TU88741 other downstream 685246 43731 ~ 44346 (-) True G74824
TU88709 other downstream 697553 18934 ~ 32039 (-) True G74815
XR_004578164.1 other upstream 101185 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 104809 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 180793 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 388078 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 414662 1171881 ~ 1187499 (-) False lcp1

Expression Profile