RNA id: TU89394


Basic Information

Item Value
RNA id TU89394
length 999
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G75372
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 767361 ~ 772430 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGTGAcctaattagttgaatggattTGATCTGTGGGCGATTACTGTGTCACTTgatctgaaaataaatacacctgCTCCTGGAAGAACGCAGAGAGTATTAGAGAACATCACACCTAAACAACCAAGGAGCTATCAGAACAAGTCCAGGACAATGCTCTGGAAAAGGATTAATCAGGGTCTGGGTGTGGTTTTAACAAAATAtaccaaactttgaacatcctgcAACGTGACATTAACAGTAACAGAGTAAAGAGCGGAttagtcaggaaaaaaaagaaaaaaaaaaaacaagagtcCAAGGGTAACTCGCTACtctgatgctcccaccaccatgcttcacagtaaGGAGGCTGGTTTccaaacacagcacaaaatGTTTGACTCCAACATGCcttctgtaaaacacacactccaatAGTGTGTGCTATTTTGTGTACATTCATGACATTATAATCCCAGttacatccatccattcagAGAATCATCACTGCGTCACTCACTCCAGCTTGACTGTGGGTTTGGAGAAGAATTCGTTATAAAGCTGATGTTCGTCTTGACACACGTGCACCATGAAAGCACAGCCGCTGCGCacctgaacaaacacacacacacacacacacagaaacagtaCTGCAttctgtaaacactaaacagtcAGCGCTAATTATCATTAAGTGATAATGAATAAACCTGTTATGTGTAGAATTATTCAGCATGCAGTTAGCATTAAAGAAAATGAGCATGAATCAAGAGCTAATGTAAACCAAGTATTAGCGTGCATAAGGAATTAGCATGAATGCAAAACTAGCATGAAGAATTAGCATGAAATAAGAACTAGCATTAACATGAATTTATTGACATTAACATAAAGTATTAGCaggaataaagaataaagttgTGAAAAGGATGAGGCAAAGTTGTATTGTTGCTGCTCAGTGCTGGTtgttgtactgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89390 lncRNA downstream 2806 764295 ~ 764555 (-) True G75369
TU89388 lncRNA downstream 4521 762640 ~ 762840 (-) False frmpd4
TU89386 lncRNA downstream 6523 760352 ~ 760838 (-) True G75365
TU89374 lncRNA downstream 46755 719505 ~ 720606 (-) True G75356
TU89361 lncRNA downstream 48319 691080 ~ 719042 (-) False tmsb4x
TU89366 lncRNA upstream 24392 796822 ~ 892057 (-) True G75348
TU89458 lncRNA upstream 147466 919896 ~ 926094 (-) True LOC113524338
TU89460 lncRNA upstream 155429 927859 ~ 928966 (-) True G75429
TU89459 lncRNA upstream 156717 929147 ~ 929357 (-) True G75428
TU89682 lncRNA upstream 307493 1079923 ~ 1080355 (-) True G75599
XM_034304257.1 mRNA downstream 1370 729592 ~ 765991 (-) False frmpd4
XM_034304255.1 mRNA downstream 4512 729592 ~ 762849 (-) False frmpd4
XM_026910507.2 mRNA downstream 9440 729592 ~ 757921 (-) False frmpd4
XM_034304254.1 mRNA downstream 9440 729592 ~ 757921 (-) False frmpd4
XM_034304258.1 mRNA downstream 10142 729592 ~ 757219 (-) False frmpd4
XM_026910542.2 mRNA upstream 54851 827281 ~ 833892 (-) True dct
XM_026910560.2 mRNA upstream 88567 860997 ~ 864607 (-) True sox21b
XM_034304281.1 mRNA upstream 148406 920836 ~ 936968 (-) False LOC113524338
XM_026910548.2 mRNA upstream 148406 920836 ~ 936968 (-) False LOC113524338
XM_026910528.2 mRNA upstream 171889 944319 ~ 957738 (-) True LOC113524324
TU88975 other downstream 566643 195031 ~ 200718 (-) False nms
TU88976 other downstream 567036 195031 ~ 200325 (-) True nms
TU89040 other downstream 604784 162214 ~ 162577 (-) True G75076
TU88741 other downstream 723015 43731 ~ 44346 (-) True G74824
TU88709 other downstream 735322 18934 ~ 32039 (-) True G74815
XR_004578164.1 other upstream 85974 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 89598 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 165582 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 372867 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 399451 1171881 ~ 1187499 (-) False lcp1

Expression Profile