RNA id: XR_004578164.1


Basic Information

Item Value
RNA id XR_004578164.1
length 2256
RNA type misc_RNA
GC content 0.44
exon number 3
gene id sox21b
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 858404 ~ 864607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacagctctcagaTTGCTGCACTCAGTGTCTGTAAAGTCACTATGCCggagacacacactcactcactcacacacacacacacacacacagagagagagagagagagcacagacgtacttcttccttctttcccttcttttaacttaaaaaacaaCGTGACGGATTTACACCTTGgatctggttttatttttaaacaaacaaaaaaaaactttgtggaTTTTTCTTTACCTTGGAAGAATTTAGacagttttgttgttgttgttgttgttgttttttaaatcattcaattattcatttttttaattggctTTGCTGCTGATTATTGTagttctttcatttttcttgcaGCATTGGACATCAGGTCTTCTCAAGTCTCAAAGATTGTGACTTTTTTAAGgacatgaaataattttttaatcacTATCATCTTTTAGAAAGCggcttgtctttttttgttttgttttgttttttgtttttttttctggatgacGGTCAGCAAATTTCATGCAagcgatttttaactttatctcACCATCACGCTGAAAACGTCTGATAAATATGTTCATGATTTTCGTGAAGACTCTGAGAAACTGACCTCGATGCTAACTGAAGGAACTGAACTGCGGTGACTCGAGCTCTGATTGACTCACGCTTTGTGTTGCCAAAATGAACAATAAGAGACTTTGtacagaaggtttttttttttttttcattgttatcATCACTTCGGATCGTGTAAAAGTATCCAGTGAACAAGTTTAAGGTTTGTCAGTGAACTTAGAATCACCTGCTGCGCCTAACATTCACGTTttggattaattttttttttctggaggtGATTCGAGGTGTTCAATAGCTCCAGCTTTAAGGCGAAAACCGAAACCTTGCTCggtttttgaaagcatcttaaGCTGACGCTTCGTAAACAAATTCCAACACATGAGAATTTTCATCTAATTGTTTGACGTTCACTGTAATGCTTGCCAGATTGAGCAAAAACAGACAGTaaggttttttttcattattatcatGATGCTGGATCATGTCACGCCTCTGATGAACACGTTTATGGTTTGTTACGTTAATTATATTCCTAAAGTCAGTCAATGATAACTCATTCACCTACAAATGGCTCCGGTTTAACAAAAAAGAAGTgacagatttattgtttttcattgtcATGCTTAAGGACTGTGGGCGATTTTAGTGATCATGTGATCAAGTAAAGTGTCCAATGCAATCTTAAGCAAGCTTgttctaaaagaaaaaagaaaatctaactTTGGCAAACTGATCCAGACGTTTTtttctgtcatcatcatcatcatcatgtcgAAGTCTTCGGACCACGTGAAACGCCCGATGAACGCCTTCATGGTCTGGTCTCGAGCCCAGCGCCGGCAGATGGCACAAGAGAACCCGAAGATGCACAACTCTGAGATCAGTAAGCGTCTCGGCGCCGAGTGGAAGCTGCTAACCGACTCGGAGAAGCGCCCGTTCATCGACGAGGCGAAACGACTCCGCGCGCTGCACATGAAGGAGCACCCCGACTACAAATACCGGCCGAGACGGAAACCCAAAACCCTCGCCAAGAAGGAGAAGTTTGCGCTGGCCCTGCCATACGGCGTGCACGCGGAAGCGGAGACGCTAAAACCCTCGGCTGACTCTCTAGTGCGCGCTTCGGACAGAGCGAGGATCCTGTTTGCGCCGTCCATCTGCGCCAACCCGTACTCCTTTTTGGATTTCGGATCCAAGATGGCTGACTTCTCTCCACCTCCGCCTCCCCCGCCTCCTCTTCCCCCGGCAATGCCGTCGTTCCCGTATCCGTCGTCGCTGGGTTTCCCGCCTTTTTCAGGCGTCCACGCGCACACGAGCGCGCACAACCCGGCCTTTTTGATGCCTTGCAGCTGCAGCGCGTGGCCCTCGTCATCGTCTTCATCATCGCCGTCTTCATCGTCATCGTTTTCAACACCGCTGGCGTACATCCTGCTGCCTGGCGTCGGTAAAGCGCCAATCGAGCCGTATCACGCCTACGCCACCGCGTTATGAGACCAACAGCCGATAATCGTGAGGTCACGACGGAGCATAAAAAGCCCAAATGTGTGTGATGCATGTGTCGGGAATGAGCAGTGTGTAGCGCactataaaacaaaactaaacaaaaaaaataggaCGTTTACTTTTGACTAATGGATGATACACACCtttaagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89394 lncRNA downstream 85974 767361 ~ 772430 (-) True G75372
TU89390 lncRNA downstream 93849 764295 ~ 764555 (-) True G75369
TU89388 lncRNA downstream 95564 762640 ~ 762840 (-) False frmpd4
TU89386 lncRNA downstream 97566 760352 ~ 760838 (-) True G75365
TU89374 lncRNA downstream 137798 719505 ~ 720606 (-) True G75356
TU89458 lncRNA upstream 55289 919896 ~ 926094 (-) True LOC113524338
TU89460 lncRNA upstream 63252 927859 ~ 928966 (-) True G75429
TU89459 lncRNA upstream 64540 929147 ~ 929357 (-) True G75428
TU89682 lncRNA upstream 215316 1079923 ~ 1080355 (-) True G75599
TU89683 lncRNA upstream 216600 1081207 ~ 1081406 (-) True G75600
XM_026910542.2 mRNA downstream 24512 827281 ~ 833892 (-) True dct
XM_034304257.1 mRNA downstream 92413 729592 ~ 765991 (-) False frmpd4
XM_034304255.1 mRNA downstream 95555 729592 ~ 762849 (-) False frmpd4
XM_026910507.2 mRNA downstream 100483 729592 ~ 757921 (-) False frmpd4
XM_034304254.1 mRNA downstream 100483 729592 ~ 757921 (-) False frmpd4
XM_034304281.1 mRNA upstream 56229 920836 ~ 936968 (-) False LOC113524338
XM_026910548.2 mRNA upstream 56229 920836 ~ 936968 (-) False LOC113524338
XM_026910528.2 mRNA upstream 79712 944319 ~ 957738 (-) True LOC113524324
XM_026910536.2 mRNA upstream 238433 1103040 ~ 1112551 (-) True LOC113524329
XM_034304297.1 mRNA upstream 290512 1155119 ~ 1159338 (-) False rpl31
TU88975 other downstream 657686 195031 ~ 200718 (-) False nms
TU88976 other downstream 658079 195031 ~ 200325 (-) True nms
TU89040 other downstream 695827 162214 ~ 162577 (-) True G75076
TU88741 other downstream 814058 43731 ~ 44346 (-) True G74824
TU88709 other downstream 826365 18934 ~ 32039 (-) True G74815
XR_003402538.2 other upstream 73405 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 280690 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 307274 1171881 ~ 1187499 (-) False lcp1
trnas-uga_4 other upstream 365702 1230309 ~ 1230390 (-) True trnas-uga_4
trnal-cag_10 other upstream 365980 1230587 ~ 1230669 (-) True trnal-cag_10

Expression Profile