RNA id: TU89458


Basic Information

Item Value
RNA id TU89458
length 1986
lncRNA type sense_over
GC content 0.39
exon number 4
gene id LOC113524338
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 919896 ~ 936968 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcgaactgattaaaacatttaacattataaaagttCTATAATTGAGACTTTATAATGACAGTGGCTGTGAGATTcaacagaacaacaaaacaagtagaactcgaaTCCAACAGCATTAACAGTGATGCCTCTGCCATCAACAAGTTTAGTTTTTACTAATTTGTTTACCTCTAAtgcccttaaaatatacttcagacAGGGAACAAGCCATTAAGGAAAAACTATTCTAGACTTTGACCGTAATGTGATCCTGACCCTGTTtgaatcaattccaaaatctaatcagttcatgtGCAGGTGAAAATGATTATTCCATACAAAAATCTAGGACAAAAGGACGGACAGACAGTCAGATGGACGGATAACCCAAGAACATAATGCCTTCACTCAAATTTATAAATGAGGGGTTAGGTAGGGGTTAGTTGTTCTGTCAGAGAAGCTCTCAGAAACCATAAAAACATGGGAGAATCTTCTAGCTCCTACATACTGCTGAAGGAGCTGCTTCAAACCTTCAAGCAGCATACAAAAGGGTCAGGGAAGAGAACTTAAGATTAAAGGCAAAAGTGGACAGCCTTCAAGAGCGGGTAGCTGCCCTTGAGGCTGACAAGGTGTTTTTGCAGAATAGTCTTTCAGCAGCACTTGCAAAGAAAGTCACTGGTTTGGATGAGGAAGcatcagaagaagaaagaaaaacaattgtGATgaggacaaagaaaaaagtggcTAAAAAGAGGGAACGTAGCTCATCTTcctcctctgtctcttcctcctcctcatcttcctcatcctcactgcaaaaaaagaagtataaaaaggggaaaggaaaagaaaagagaaagaagtacagggctggtgaaaaaaaaggcagaaaagagTTCTACTGCCAGAGCATGCACTGGACCGGTATCAGAGGGTCCTAAAGGCAGTGGCATCAGGTCTTACAAAGACTGAGGCCTATGCTAAAGTCGGCGTAGATAGGAAGACGGTTGCTGATTCAGCATGTATTGCCGAACTGGCAGAATGTGATGAGGATGCTTACAATAGACTTCGAGCATCTTTTAAACGAGGAGACAAAATGTCAGACTTCGTGGCCAGGTGTAAAGAACTCTGTAGTGAGGAGCCACtaaaaacagaaattattaaaaaaaaggaagcggGATCGCTACTGGACATTTTTGAACggaagcaaaataaaacataatcagATCTGAGTAGTTTTGAGTGTTTTAGTATTAAGTAAAAATCCAGCCTGTTTGGTTGAAGTTCATCttatttgtattgtatatgtAGCACGCTGTCAAATGTTAAATTGGAATTGTATATGTTATTTGTTCAGATTTATATTTGCTAGTCAAGTTTTCTGTCACAGTATGTAATGTTTACTGAAGAAATTCCTAGGAATGAATTAGACACGAGTAGTAACTCGTGAGCCCAGTGCTGAGTaagtattgtttatattgaaataatcCTTCATGTATTACATGTTAATTCTGTACAGTGGATTACCACTTTAGTACAGGGGGCACAAGCactattaataatgaaaagtcAGTAACACATCAGTTAAGAAACATGATTTCTACGTCTGAAATAAAGGATCCACCAAGAAATAAAGGATGGCCCAAATTAAAGGgttgttacagtggcattttAAGGGGGGAAGTGccttttgtgactttttttttacaatggaATTTTAAGGGGGAACAGCTTTAAAATTGGTTAGTGACATCTTGAAGGGAAACTGCTTTTTTGTGATTGATACAGTGGTATTTAAGGGGAATTGCTTTCCAAATGGTCAGACAacgaccccaaacatacagccaaaataactcaagaaggccttCCATGGCTGAGTCACtctcctgacttgaatcccAGGGAAAATGTATGGAAGATTTTGAAATCGCAAGTCCATCAGAAGGACCCTCATAAGCTTTGGGAACTGAAGATGATTTGCCAAAAGGAATGGAACAAAactgaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89366 lncRNA downstream 27839 796822 ~ 892057 (-) True G75348
TU89394 lncRNA downstream 147466 767361 ~ 772430 (-) True G75372
TU89390 lncRNA downstream 155341 764295 ~ 764555 (-) True G75369
TU89388 lncRNA downstream 157056 762640 ~ 762840 (-) False frmpd4
TU89386 lncRNA downstream 159058 760352 ~ 760838 (-) True G75365
TU89460 lncRNA upstream 1765 927859 ~ 928966 (-) True G75429
TU89459 lncRNA upstream 3053 929147 ~ 929357 (-) True G75428
TU89682 lncRNA upstream 153829 1079923 ~ 1080355 (-) True G75599
TU89683 lncRNA upstream 155113 1081207 ~ 1081406 (-) True G75600
TU89714 lncRNA upstream 209532 1135626 ~ 1140203 (-) True G75628
XM_026910560.2 mRNA downstream 55289 860997 ~ 864607 (-) True sox21b
XM_026910542.2 mRNA downstream 86004 827281 ~ 833892 (-) True dct
XM_034304257.1 mRNA downstream 153905 729592 ~ 765991 (-) False frmpd4
XM_034304255.1 mRNA downstream 157047 729592 ~ 762849 (-) False frmpd4
XM_026910507.2 mRNA downstream 161975 729592 ~ 757921 (-) False frmpd4
XM_026910528.2 mRNA upstream 18225 944319 ~ 957738 (-) True LOC113524324
XM_026910536.2 mRNA upstream 176946 1103040 ~ 1112551 (-) True LOC113524329
XM_034304297.1 mRNA upstream 229025 1155119 ~ 1159338 (-) False rpl31
XM_034304298.1 mRNA upstream 229025 1155119 ~ 1159197 (-) False rpl31
XM_026911023.2 mRNA upstream 244615 1170709 ~ 1187499 (-) True lcp1
XR_004578164.1 other downstream 55289 858404 ~ 864607 (-) False sox21b
TU89432 other downstream 55402 862028 ~ 864494 (-) False sox21b
TU88975 other downstream 719178 195031 ~ 200718 (-) False nms
TU88976 other downstream 719571 195031 ~ 200325 (-) True nms
TU89040 other downstream 757319 162214 ~ 162577 (-) True G75076
XR_003402538.2 other upstream 11918 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 219203 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 245787 1171881 ~ 1187499 (-) False lcp1
trnas-uga_4 other upstream 304215 1230309 ~ 1230390 (-) True trnas-uga_4
trnal-cag_10 other upstream 304493 1230587 ~ 1230669 (-) True trnal-cag_10

Expression Profile