RNA id: TU89682


Basic Information

Item Value
RNA id TU89682
length 433
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G75599
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1079923 ~ 1080355 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCATCACAAAGACTCCACCACCTGCTATTGAGGTGGTCCAGAACGGCCGGGCGCGCAACATTCTTAAGGACTCCTCCCATCCTGCCCACAGTCTTTTCCAGCTCCTCCCCTCCAGGAGGCGCTACAGGAGCCTCAAGACCAAAACCAGCAGGTTTaggaacagctttttccctaCAGCTGTCTCCCTACTAAACTCTGTCCCCCACtgaactgtatataactatatctaactgtatatacatatctgtatatattgttCATACCTCATCTCTGTACTTGTACATATTGTTCTTACCAGGTCTTTCAATTGCCCATCTGTacattagtatagcacatctgtagattagttCATACTACATCTGCATATTAgcattagtatagcacatctgtatattgtacatattacatCTGTATATTCTTGCACTATCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89459 lncRNA downstream 150566 929147 ~ 929357 (-) True G75428
TU89460 lncRNA downstream 150957 927859 ~ 928966 (-) True G75429
TU89458 lncRNA downstream 153829 919896 ~ 926094 (-) True LOC113524338
TU89366 lncRNA downstream 187866 796822 ~ 892057 (-) True G75348
TU89394 lncRNA downstream 307493 767361 ~ 772430 (-) True G75372
TU89683 lncRNA upstream 852 1081207 ~ 1081406 (-) True G75600
TU89714 lncRNA upstream 55271 1135626 ~ 1140203 (-) True G75628
TU89729 lncRNA upstream 89104 1169459 ~ 1169693 (-) True G75640
TU89722 lncRNA upstream 129030 1209385 ~ 1215704 (-) True G75636
TU89753 lncRNA upstream 156866 1237221 ~ 1254096 (-) True G75663
XM_026910528.2 mRNA downstream 122185 944319 ~ 957738 (-) True LOC113524324
XM_034304281.1 mRNA downstream 142955 920836 ~ 936968 (-) False LOC113524338
XM_026910548.2 mRNA downstream 142955 920836 ~ 936968 (-) False LOC113524338
XM_026910560.2 mRNA downstream 215316 860997 ~ 864607 (-) True sox21b
XM_026910542.2 mRNA downstream 246031 827281 ~ 833892 (-) True dct
XM_026910536.2 mRNA upstream 22685 1103040 ~ 1112551 (-) True LOC113524329
XM_034304297.1 mRNA upstream 74764 1155119 ~ 1159338 (-) False rpl31
XM_034304298.1 mRNA upstream 74764 1155119 ~ 1159197 (-) False rpl31
XM_026911023.2 mRNA upstream 90354 1170709 ~ 1187499 (-) True lcp1
XM_034304768.1 mRNA upstream 191052 1271407 ~ 1282002 (-) True ints6
XR_003402538.2 other downstream 141720 938012 ~ 938203 (-) True LOC113524372
XR_004578164.1 other downstream 215316 858404 ~ 864607 (-) False sox21b
TU89432 other downstream 215429 862028 ~ 864494 (-) False sox21b
TU88975 other downstream 879205 195031 ~ 200718 (-) False nms
TU88976 other downstream 879598 195031 ~ 200325 (-) True nms
TU89684 other upstream 64942 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 91526 1171881 ~ 1187499 (-) False lcp1
trnas-uga_4 other upstream 149954 1230309 ~ 1230390 (-) True trnas-uga_4
trnal-cag_10 other upstream 150232 1230587 ~ 1230669 (-) True trnal-cag_10
trnaw-cca other upstream 172568 1252923 ~ 1252994 (-) True trnaw-cca

Expression Profile