RNA id: XM_034304297.1


Basic Information

Item Value
RNA id XM_034304297.1
length 534
RNA type mRNA
GC content 0.50
exon number 5
gene id rpl31
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1145297 ~ 1159338 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttgttaaaaaataaataataaatatttcaaccCGGAAGTAAACCGTTCCTAACCCCCTTTTTGTATTACCCACAATCCTTTGCTTCTTCCTTTTCGAAGTTCGTCGAACAGAATGGCGCCGCTGAAGAAAGGAGGCGAGAAGAAGAAGGGGCGCTCCGCCATTAACGAGGTGGTGACCCGGGAGTACACCATCAACATCCACAAGCGCATCCACGGCATCTCCTTCAAGAAGCGAGCCCCTCGCGCCATTAAGGAAATCCGCAAGTTCGCCGTGAAGGAGATGGGCACGCCCGACGTTCGCATCGACACCCGCCTGAACAAGGCCGTGTGGGCGAAGGGAGTCAggAACGTCCCGTACCGCATGCGTGTGCGTTTGTCCAGGAAGCGCAACGAAGATGAAGATTCACCCAACAAGCTGTACACACTCGTCACGTACGTCCCCGTCACCACGTACAAAGGTCTCCAGACTGTCAATGTGGATGAAAACTAATGTACACCTCATGacaaattgtaataaaattctgtaaagaaa

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89714 lncRNA downstream 14916 1135626 ~ 1140203 (-) True G75628
TU89683 lncRNA downstream 73713 1081207 ~ 1081406 (-) True G75600
TU89682 lncRNA downstream 74764 1079923 ~ 1080355 (-) True G75599
TU89459 lncRNA downstream 225762 929147 ~ 929357 (-) True G75428
TU89460 lncRNA downstream 226153 927859 ~ 928966 (-) True G75429
TU89729 lncRNA upstream 10121 1169459 ~ 1169693 (-) True G75640
TU89722 lncRNA upstream 50047 1209385 ~ 1215704 (-) True G75636
TU89753 lncRNA upstream 77883 1237221 ~ 1254096 (-) True G75663
TU89783 lncRNA upstream 146651 1305989 ~ 1306353 (-) True G75687
TU89812 lncRNA upstream 207044 1366382 ~ 1367066 (-) True G75713
XM_026910536.2 mRNA downstream 42568 1103040 ~ 1112551 (-) True LOC113524329
XM_026910528.2 mRNA downstream 197381 944319 ~ 957738 (-) True LOC113524324
XM_034304281.1 mRNA downstream 218151 920836 ~ 936968 (-) False LOC113524338
XM_026910548.2 mRNA downstream 218151 920836 ~ 936968 (-) False LOC113524338
XM_026910560.2 mRNA downstream 290512 860997 ~ 864607 (-) True sox21b
XM_026911023.2 mRNA upstream 11371 1170709 ~ 1187499 (-) True lcp1
XM_034304768.1 mRNA upstream 112069 1271407 ~ 1282002 (-) True ints6
XM_034304769.1 mRNA upstream 112069 1271407 ~ 1281420 (-) False ints6
XM_034304700.1 mRNA upstream 147616 1306954 ~ 1315333 (-) True dhrs12
XM_026911029.2 mRNA upstream 147617 1306955 ~ 1315330 (-) False dhrs12
XR_003402538.2 other downstream 216916 938012 ~ 938203 (-) True LOC113524372
XR_004578164.1 other downstream 290512 858404 ~ 864607 (-) False sox21b
TU89432 other downstream 290625 862028 ~ 864494 (-) False sox21b
TU88975 other downstream 954401 195031 ~ 200718 (-) False nms
XR_003402581.2 other upstream 12543 1171881 ~ 1187499 (-) False lcp1
trnas-uga_4 other upstream 70971 1230309 ~ 1230390 (-) True trnas-uga_4
trnal-cag_10 other upstream 71249 1230587 ~ 1230669 (-) True trnal-cag_10
trnaw-cca other upstream 93585 1252923 ~ 1252994 (-) True trnaw-cca
trnal-caa_1 other upstream 98804 1258142 ~ 1258256 (-) True trnal-caa_1

Expression Profile