RNA id: TU89722


Basic Information

Item Value
RNA id TU89722
length 1538
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G75636
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1209385 ~ 1215704 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taagactttattattattattattattgttattattattaatattattaatattattattattattactacagaaaGGCTGTTATATAAATTAGCATTACACTTACTCTGGTTCATCtacacacattttgtttttctgattatGAAGGTTATATTAAGATTAGGCGAGAAGTCTAGAAATAATTTTCCTTCAATTTTATTATTCTCAACTGTTAAAGCCACAGGCACAACATGGTTCAGTGGtataaaaatgactttaatttTTACCTTCATGCCAGAATATCCTTTGTTAATTtgaaaatatacacatacattcgATCTAGATCTGAATTTATTCGAATATAGATTTCTAAAAGGCTCATCTTTTTTCTAATTCATATCgaaaatatgaaatgtgttaCTGAATATCATCCAATACCAAGAGAACaaatcaacaataaaaaaaaaaaatgaactacaTAAAGATTATATCAACCAGatgaaacatgcacacacacacacacacacacacgctctctccacacacacacacacactcattattttATAACATGATACCCATGAACAAGAATTAGAGAAGCTTATCGCATAATGGAAACTGAAGCAATCATTACATGACCCACAGCATGAACATGATTTTATGTGCAACAGgataaactgaaaatgaaacaaaaatatccCTTTCTTTcgcttgtttttttttctctctctctctctctctctctctagatccagtttttaaaatgtctttagaaaaaaaaatgtttccatgAACTGCCTGAAGAATCTGTGAACACTTTAACTTAtacgcatttttttttttaggtattcCAAAAAATGTCTTGATTTTCGCTATCATGTGTGCCTCATTATACATATTTGTCCTTCGTTTTGACGTAATAAAACCGGTTACATTCATGGTCCGTTGATTATCTAACACTGTAGATAATACTAGTCTGAATATGTTGTtatattagacttagattaaaACCAAACTTCACTTATTTTATAAGCAAAGCAAACAATATGTATCAGTAGGTATTTTCTTGTACTggattaattcaattcaattttatttgtatagcgttttGACAATATATATTGTAATGTAAATAACTAGAGTTAGATCCTTAATGAAcaaaccagaggtgacagtggcaaggaaaaactccctgagactacatgaggaagaaatcctACGAGGAGTCGagcgattataaatcataaggatagtgcgattataaatcattacccTTCTACAATGGTATATAATGGTATATAATGGTATATAATgggttgaaaggatgttcagtacgAGCAGCAGGGTCTTTATGACTACAGCAGTACACTGTCCAGGTCAGAGTTTCCACTGAAGAACAGATGAGTCTTGGGGTTTTTGGGAAGTACGAATTCTTTGGGTATCTACATGAGAccatccacaacagcagaaagtcAACTAGGTCGGggcttgatttattttaaatcagcGTATTACTGATGTGTTTATGTATAAAACGGTTTAAATGGAATATGCTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89729 lncRNA downstream 39692 1169459 ~ 1169693 (-) True G75640
TU89714 lncRNA downstream 69182 1135626 ~ 1140203 (-) True G75628
TU89683 lncRNA downstream 127979 1081207 ~ 1081406 (-) True G75600
TU89682 lncRNA downstream 129030 1079923 ~ 1080355 (-) True G75599
TU89459 lncRNA downstream 280028 929147 ~ 929357 (-) True G75428
TU89753 lncRNA upstream 21517 1237221 ~ 1254096 (-) True G75663
TU89783 lncRNA upstream 90285 1305989 ~ 1306353 (-) True G75687
TU89812 lncRNA upstream 150678 1366382 ~ 1367066 (-) True G75713
TU89818 lncRNA upstream 159682 1375386 ~ 1377189 (-) True G75719
TU89826 lncRNA upstream 169154 1384858 ~ 1385522 (-) True G75727
XM_026911023.2 mRNA downstream 21886 1170709 ~ 1187499 (-) True lcp1
XM_034304297.1 mRNA downstream 50047 1155119 ~ 1159338 (-) False rpl31
XM_034304298.1 mRNA downstream 50188 1155119 ~ 1159197 (-) False rpl31
XM_026910536.2 mRNA downstream 96834 1103040 ~ 1112551 (-) True LOC113524329
XM_026910528.2 mRNA downstream 251647 944319 ~ 957738 (-) True LOC113524324
XM_034304768.1 mRNA upstream 55703 1271407 ~ 1282002 (-) True ints6
XM_034304769.1 mRNA upstream 55703 1271407 ~ 1281420 (-) False ints6
XM_034304700.1 mRNA upstream 91250 1306954 ~ 1315333 (-) True dhrs12
XM_026911029.2 mRNA upstream 91251 1306955 ~ 1315330 (-) False dhrs12
XM_034304180.1 mRNA upstream 104559 1320263 ~ 1339222 (-) True rubcnl
XR_003402581.2 other downstream 21886 1171881 ~ 1187499 (-) False lcp1
TU89684 other downstream 50116 1145297 ~ 1159269 (-) True rpl31
XR_003402538.2 other downstream 271182 938012 ~ 938203 (-) True LOC113524372
XR_004578164.1 other downstream 344778 858404 ~ 864607 (-) False sox21b
TU89432 other downstream 344891 862028 ~ 864494 (-) False sox21b
trnas-uga_4 other upstream 14605 1230309 ~ 1230390 (-) True trnas-uga_4
trnal-cag_10 other upstream 14883 1230587 ~ 1230669 (-) True trnal-cag_10
trnaw-cca other upstream 37219 1252923 ~ 1252994 (-) True trnaw-cca
trnal-caa_1 other upstream 42438 1258142 ~ 1258256 (-) True trnal-caa_1
trnan-guu_14 other upstream 71349 1287053 ~ 1287127 (-) True trnan-guu_14

Expression Profile