RNA id: TU89753


Basic Information

Item Value
RNA id TU89753
length 200
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G75663
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1237221 ~ 1254096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcaatattaaactcaggttactgtctgtgtgtggtttcaCAAGTTCTTcccatgtttgtgtggGTTTCCTCCAGCTTCTCTGGGTTTAACTGGTAATGTGGTCTTTTCAAACCCACACACTGTGATCTAATCATAGTAAATTGGTcacatataaaaagaaaattataaaatagaGCTATGTACTGACTGAGCACATAAA

Function

GO:

id name namespace
GO:0015103 inorganic anion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89722 lncRNA downstream 21517 1209385 ~ 1215704 (-) True G75636
TU89729 lncRNA downstream 67528 1169459 ~ 1169693 (-) True G75640
TU89714 lncRNA downstream 97018 1135626 ~ 1140203 (-) True G75628
TU89683 lncRNA downstream 155815 1081207 ~ 1081406 (-) True G75600
TU89682 lncRNA downstream 156866 1079923 ~ 1080355 (-) True G75599
TU89783 lncRNA upstream 51893 1305989 ~ 1306353 (-) True G75687
TU89812 lncRNA upstream 112286 1366382 ~ 1367066 (-) True G75713
TU89818 lncRNA upstream 121290 1375386 ~ 1377189 (-) True G75719
TU89826 lncRNA upstream 130762 1384858 ~ 1385522 (-) True G75727
TU89831 lncRNA upstream 138683 1392779 ~ 1395138 (-) True G75732
XM_026911023.2 mRNA downstream 49722 1170709 ~ 1187499 (-) True lcp1
XM_034304297.1 mRNA downstream 77883 1155119 ~ 1159338 (-) False rpl31
XM_034304298.1 mRNA downstream 78024 1155119 ~ 1159197 (-) False rpl31
XM_026910536.2 mRNA downstream 124670 1103040 ~ 1112551 (-) True LOC113524329
XM_026910528.2 mRNA downstream 279483 944319 ~ 957738 (-) True LOC113524324
XM_034304768.1 mRNA upstream 17311 1271407 ~ 1282002 (-) True ints6
XM_034304769.1 mRNA upstream 17311 1271407 ~ 1281420 (-) False ints6
XM_034304700.1 mRNA upstream 52858 1306954 ~ 1315333 (-) True dhrs12
XM_026911029.2 mRNA upstream 52859 1306955 ~ 1315330 (-) False dhrs12
XM_034304180.1 mRNA upstream 66167 1320263 ~ 1339222 (-) True rubcnl
trnal-cag_10 other downstream 6552 1230587 ~ 1230669 (-) True trnal-cag_10
trnas-uga_4 other downstream 6831 1230309 ~ 1230390 (-) True trnas-uga_4
XR_003402581.2 other downstream 49722 1171881 ~ 1187499 (-) False lcp1
TU89684 other downstream 77952 1145297 ~ 1159269 (-) True rpl31
XR_003402538.2 other downstream 299018 938012 ~ 938203 (-) True LOC113524372
trnal-caa_1 other upstream 4046 1258142 ~ 1258256 (-) True trnal-caa_1
trnan-guu_14 other upstream 32957 1287053 ~ 1287127 (-) True trnan-guu_14
trnat-agu_1 other upstream 35631 1289727 ~ 1289800 (-) True trnat-agu_1
trnan-guu_15 other upstream 37490 1291586 ~ 1291660 (-) True trnan-guu_15
trnat-agu_2 other upstream 39775 1293871 ~ 1293944 (-) True trnat-agu_2

Expression Profile