RNA id: TU89818


Basic Information

Item Value
RNA id TU89818
length 1780
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G75719
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1375386 ~ 1377189 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAccctaagagagagagagagagagagagagagagagagagagagtatacagGAACGGTGGAGGAAAGCACTCGTGTACAGAGAACATGTCCTTCAAGAGCAGATCCTCATGCTTTCGCAAACTTGCTTTTGGCCACAAAGTGGTgttcagttattaaaaaaaaaaaaaaaaagtgtgtgaagaAGTACAATGAGGCCCTGTTCTTGCCCTTAACGTCTCTCTGTCTTGCCCTTTattagcttttctttttccttcctctcGCTatacctctccctctctttgttCTCACTATAGCGTGGAACCGAAACACCACTCGaaatttcaaaaacaacaaCCGCGTCGAGCTAGTCAGCGTGAACTACGACATGAACGTGGTACACACGAAGATGATCTGAAACCATAAAACAGGTCTAACACACCAGTTAGAGTTGTTCGAGATAACAGCGCACGCCTGCTTTGCCTGGAAAAGGCCGATATATCCAGACTCGTAACCTTGATCAGGAAAGAAAAGCcagcatgcagaaaaaaaaatgcagaaatcaaCTTCTGGAAATGATCAGAGCTTGAATAAGAATGTGAGCCTTCACTGGCGAGAGGAAAGGGGTGTGTTCTTGTGATACTGTGAGACCCAAATCTGCAGGTTATGACGGTCAATATAGCGTGTGCATCCATAATTGCACTAAGATTCCCAGATGTGCACAGATGGGCTGTGAGGGGTATGTTCATGTTCACAGGTAGATAAGTTCATCAGAATTCTGAAGTCTCAAAGCAGAAAAAGATGTCCAAAAGACAGTCCAGTATCTTCTGTGTGACTTGAGAGGtggatctaaaaaaaaaaaaaaaaagccccagggttcctggttcaatcctTGAGCTCGGGTTATggacatgttctccccatgtccatatgggtttcctccaggttctctgggtTCCTCCTGCCTCCCAACAACATGCCAgttggtggattggctactctcatgcagaggaaactggagaacccagaggaaacccacacaatcatggggagaacatgcacagaaactctgcacagacagtaacacaagcTCGGGACTGAACCCAGGACTGAACCCAGGACTGAACCCAGGACTGAACCCTGGACTGtgaggcagcaacgctacccactgagCCACCGTGTCACTGTGATGTGTGGAAGCAAACCCAGTATTAAGTAGGGAGAATCAGGGATAATTAACAGATCATTTTGGAGAATTGTTATGGGACACACTTGCTAGGTTTCACTTGATCAAGGCTCCAAGAAGCTGCATAAACAGAAGCATCTTGTGTTGATGTGTGctctccatttaccttgacagaaagtcAACGTGAGTCCGGGCAAAGAGAAAAAGACTTGGCCAAAAAAGGGTCATACTGACGTAACCCAATGTTAAACTGCAGAGCTCCTATGCAAATGCGTTGTGTAAGGCTGGTTGTGTAAAGGTCGGGTAATATAATACAACAGGAGCAAACATCACTGGACACTGAAGCCTAGCTTCAGGTGTGGCCTTTCTCCCATAACTCTATGAGCTCTTTCCACTGTGAAACTTAACCAGTAAACTAGAATACAGTTTCCGGTTTATTTCCGGTGAATTCCTTGTTACTTCTGCAGCTGATTAAAAATCAGCTCTTCCGAGTGAACCTTTTACTGCTGAGCTCTAACCTCATCTGTCAACTGTCATGTGAACTCTTCCTAGTAGATAAaatcaaaaaagaaatattgtttAAGGATTCTGTTTTGAACAAGAACAGGGTTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89812 lncRNA downstream 8320 1366382 ~ 1367066 (-) True G75713
TU89783 lncRNA downstream 69033 1305989 ~ 1306353 (-) True G75687
TU89753 lncRNA downstream 121290 1237221 ~ 1254096 (-) True G75663
TU89722 lncRNA downstream 159682 1209385 ~ 1215704 (-) True G75636
TU89729 lncRNA downstream 205693 1169459 ~ 1169693 (-) True G75640
TU89826 lncRNA upstream 7669 1384858 ~ 1385522 (-) True G75727
TU89831 lncRNA upstream 15590 1392779 ~ 1395138 (-) True G75732
TU89834 lncRNA upstream 19108 1396297 ~ 1396522 (-) True G75734
TU89837 lncRNA upstream 36653 1413842 ~ 1414177 (-) True G75736
TU89838 lncRNA upstream 55833 1433022 ~ 1433227 (-) True G75737
XM_034304180.1 mRNA downstream 36164 1320263 ~ 1339222 (-) True rubcnl
XM_034304700.1 mRNA downstream 60053 1306954 ~ 1315333 (-) True dhrs12
XM_026911029.2 mRNA downstream 60056 1306955 ~ 1315330 (-) False dhrs12
XM_034304768.1 mRNA downstream 93384 1271407 ~ 1282002 (-) True ints6
XM_026910995.2 mRNA upstream 19495 1396684 ~ 1404791 (-) True esd
XM_026911012.2 mRNA upstream 152636 1529825 ~ 1552435 (-) True si:dkey-230p4.1
XM_026911013.2 mRNA upstream 177753 1554942 ~ 1566787 (-) False LOC113524666
XM_034304412.1 mRNA upstream 177753 1554942 ~ 1565392 (-) True LOC113524666
XM_026911019.2 mRNA upstream 214766 1591955 ~ 1596479 (-) True htr2aa
trnal-caa_2 other downstream 60960 1314314 ~ 1314426 (-) True trnal-caa_2
trnan-guu_16 other downstream 79616 1295696 ~ 1295770 (-) True trnan-guu_16
trnat-agu_2 other downstream 81442 1293871 ~ 1293944 (-) True trnat-agu_2
trnan-guu_15 other downstream 83726 1291586 ~ 1291660 (-) True trnan-guu_15
trnat-agu_1 other downstream 85586 1289727 ~ 1289800 (-) True trnat-agu_1
trnaw-cca_4 other upstream 37479 1414668 ~ 1414739 (-) True trnaw-cca_4
trnat-agu_4 other upstream 71002 1448191 ~ 1448264 (-) True trnat-agu_4
trnak-uuu_2 other upstream 94300 1471489 ~ 1471561 (-) True trnak-uuu_2
TU89874 other upstream 151881 1529070 ~ 1529513 (-) True G75770
trnal-caa_7 other upstream 191556 1568745 ~ 1568857 (-) True trnal-caa_7

Expression Profile