RNA id: TU89831


Basic Information

Item Value
RNA id TU89831
length 2288
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G75732
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1392779 ~ 1395138 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tCACACTAAATGAAACTCTGGTTAAATTAgtgattaaaatgtgtgactttGGATTTTAAAGTCTTATAATTGATCTTGTgtttcaaaaaaattaaaaaaattgcacaatTATTTCTACTGTAGCTTTTTGCAAAATAAAGTCTGATCAACCTGGTCTCGTGCAAAcattgtaggtttttttttttcccaacatttGTAGATTTCccaatttgttttcattgcgTCCATTCAAATTCAAGCCCTACTTAGAAAATGCACAATTAATTCTTACAGAAAGTCTCCTAGCTAGCTTACaaattttttctccattcttctCCCTGTGAAGTTtttgcacaataaatattttttttatacaaatacatttgtaGGATTAATCATGAGTGAGTGATGTGATGAAATTTCATGCAAATTAGGTTCTAACTGAATCTACAGCCTAACTGCCCTGaacaatcaataataataattaaaaaaaaataataataatttggatTTGGACCATAGAAATTCCTGGGACCATGCGATTATAGCTCCGACTTGGAAAATGAAGTCTCTGTTTTTTCAACTTTACCTATTTAGtaaacatttcaaGTTATGAagttattactactactaaagGGAAAATTATGAAAGATCAGTGTATTTGTACAATACCCAATAATCATTAACAATTAGTGCAACGCTTGCGTAAAGTCTAATCCGTCCTGATCATTAGAGGAAATTTGGTCTTGAACACAAAAGTTTTAGTTTAGTTAGCTATAATAGGTAATATAATAGCTGAATAGTTCAGTTAGTTGCTCACGGTGTTGGCGTGGACGCAGGAGTTCGCGATCGAAGTCTTTTAAAGTGTTAGATATGCGTGTGCAAATATAGGATTCATACAATATTcacaacaaaatataaaaaatatacttatTTAACAATCTATAACTCATTTTCTTATGAAAACTCAAATGTATTCTTCGTAGTACAaggaaatacaaatatatagatTTCTATAACAATtttgagattttctcagttcGATGCAAATTAGGTACGACGCCGTAAAGCGAAACATCTGTACGACTGGCTCGAATCCTCTGGTGCATGTGGTCTTCAGTTCCCTCTCCCGACTTCAgtctttagttcctacctgcgcTCAGTTCCCAATTACTGTTTGATGTAGTAGCCTACAACAAAtgttcacactgattagtgcgttCAGTTGcgtttaactagctagctttagaCGCTATACGGTATATAGCTACTAATATTGTTCAtcaggatttaaaaaagaattctgAAGACAGTGCACGCCCACAGACGccaacagacaaacaaacaaagtacgagtgacagaaaagacaaaacaaaaccatcCATTCAAACAAACATGATTCCcaattatatgtgtgtgtatatatatatatatatatatatatatatatatatatatacagtctgAAATGCATGAAACTACTCACACTCTCCTCCTAACACGTGTGCAGACAGAATCCCAAACCCACACAGTATAGTCTGTAGTCGTACATATTTACTCACTCCCACCGCTAATGTACTTCCCTTTATCAGTTATGAAttgtcagttaatattcacgTTACACTTTATTCCACCACATcgcacacatacataaacatatgcTGGACCGAagcagagaaaaaagacagaaatagttTTATATTCTGTAGTCTACTGAGGTCACACCTCCCCTGAGACATccaaaaggtgtgtgtgtgtgtagtattaaTGAGCCGTTCATGTCCTCGCTGCTCGTTAAtattacgcacacacacacacacacacacacacacacacacactgcctgtcaAATGTGTAAGGAcacctggctttttttttttttttttctttcaaaaataacttaaaatttTATCACTTGTTTTACTGCATGggtgaatctctctctctatcgctcactcacacacacacacacacacacaccttgatcTGACTCCACCAGAGCAGAGCAGCTGGACAGGATAAGGTTAAATGACCGGGAAGGCCGTTCCACTCCACACAGCACTGCCTACTTCCTCTCGAATTCTCTAAATCCTCTCCAAATATCACTCGGCATGGTTTTAAAACACGTTTGGGCTCACTGAAAATCAAACATTACTAACCTAAaaatttttctgtgtgtgtgtgtgtgagagagagagaaagagagagagagagaggaaacttttttttttttttgctgtatccCAATCACAATGCACATCTCTTGCCTCAACCAGATCtcccctgtgaacctttctgtcaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89826 lncRNA downstream 7257 1384858 ~ 1385522 (-) True G75727
TU89818 lncRNA downstream 15590 1375386 ~ 1377189 (-) True G75719
TU89812 lncRNA downstream 25713 1366382 ~ 1367066 (-) True G75713
TU89783 lncRNA downstream 86426 1305989 ~ 1306353 (-) True G75687
TU89753 lncRNA downstream 138683 1237221 ~ 1254096 (-) True G75663
TU89834 lncRNA upstream 1159 1396297 ~ 1396522 (-) True G75734
TU89837 lncRNA upstream 18704 1413842 ~ 1414177 (-) True G75736
TU89838 lncRNA upstream 37884 1433022 ~ 1433227 (-) True G75737
TU89840 lncRNA upstream 59861 1454999 ~ 1455287 (-) True G75739
TU89841 lncRNA upstream 72524 1467662 ~ 1467899 (-) True G75740
XM_034304180.1 mRNA downstream 53557 1320263 ~ 1339222 (-) True rubcnl
XM_034304700.1 mRNA downstream 77446 1306954 ~ 1315333 (-) True dhrs12
XM_026911029.2 mRNA downstream 77449 1306955 ~ 1315330 (-) False dhrs12
XM_034304768.1 mRNA downstream 110777 1271407 ~ 1282002 (-) True ints6
XM_026910995.2 mRNA upstream 1546 1396684 ~ 1404791 (-) True esd
XM_026911012.2 mRNA upstream 134687 1529825 ~ 1552435 (-) True si:dkey-230p4.1
XM_026911013.2 mRNA upstream 159804 1554942 ~ 1566787 (-) False LOC113524666
XM_034304412.1 mRNA upstream 159804 1554942 ~ 1565392 (-) True LOC113524666
XM_026911019.2 mRNA upstream 196817 1591955 ~ 1596479 (-) True htr2aa
trnal-caa_2 other downstream 78353 1314314 ~ 1314426 (-) True trnal-caa_2
trnan-guu_16 other downstream 97009 1295696 ~ 1295770 (-) True trnan-guu_16
trnat-agu_2 other downstream 98835 1293871 ~ 1293944 (-) True trnat-agu_2
trnan-guu_15 other downstream 101119 1291586 ~ 1291660 (-) True trnan-guu_15
trnat-agu_1 other downstream 102979 1289727 ~ 1289800 (-) True trnat-agu_1
trnaw-cca_4 other upstream 19530 1414668 ~ 1414739 (-) True trnaw-cca_4
trnat-agu_4 other upstream 53053 1448191 ~ 1448264 (-) True trnat-agu_4
trnak-uuu_2 other upstream 76351 1471489 ~ 1471561 (-) True trnak-uuu_2
TU89874 other upstream 133932 1529070 ~ 1529513 (-) True G75770
trnal-caa_7 other upstream 173607 1568745 ~ 1568857 (-) True trnal-caa_7

Expression Profile