RNA id: TU89840


Basic Information

Item Value
RNA id TU89840
length 289
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G75739
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1454999 ~ 1455287 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cccttgattcttaatactgtgttgttacctgaatgatccacagctgtgtttttttgtttactgatagttgttcaagagtcccttgtttgtcctgaacagttaaactgcctgctgttcttcagaaaaatccttcaggtcccacaaattctttggttttccagcatttttgtgtatttgaaccctttccaacaatgactatGATTTtcagatccatcttttcacactgaggacaactgagggactcatatgcaactattacagaaggttcaaacgctcacagatgctccag

Function

GO:

id name namespace
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89838 lncRNA downstream 21772 1433022 ~ 1433227 (-) True G75737
TU89837 lncRNA downstream 40822 1413842 ~ 1414177 (-) True G75736
TU89834 lncRNA downstream 58477 1396297 ~ 1396522 (-) True G75734
TU89831 lncRNA downstream 59861 1392779 ~ 1395138 (-) True G75732
TU89826 lncRNA downstream 69477 1384858 ~ 1385522 (-) True G75727
TU89841 lncRNA upstream 12375 1467662 ~ 1467899 (-) True G75740
TU89924 lncRNA upstream 136784 1592071 ~ 1592274 (-) False htr2aa
TU89942 lncRNA upstream 201086 1656373 ~ 1656848 (-) True G75814
TU90012 lncRNA upstream 267294 1722581 ~ 1722799 (-) True G75875
TU90038 lncRNA upstream 345985 1801272 ~ 1819183 (-) True G75889
XM_026910995.2 mRNA downstream 50208 1396684 ~ 1404791 (-) True esd
XM_034304180.1 mRNA downstream 115777 1320263 ~ 1339222 (-) True rubcnl
XM_034304700.1 mRNA downstream 139666 1306954 ~ 1315333 (-) True dhrs12
XM_026911029.2 mRNA downstream 139669 1306955 ~ 1315330 (-) False dhrs12
XM_034304769.1 mRNA downstream 173579 1271407 ~ 1281420 (-) False ints6
XM_026911012.2 mRNA upstream 74538 1529825 ~ 1552435 (-) True si:dkey-230p4.1
XM_026911013.2 mRNA upstream 99655 1554942 ~ 1566787 (-) False LOC113524666
XM_034304412.1 mRNA upstream 99655 1554942 ~ 1565392 (-) True LOC113524666
XM_026911019.2 mRNA upstream 136668 1591955 ~ 1596479 (-) True htr2aa
XM_026911002.2 mRNA upstream 160613 1615900 ~ 1624049 (-) True med4
trnat-agu_4 other downstream 6735 1448191 ~ 1448264 (-) True trnat-agu_4
trnaw-cca_4 other downstream 40260 1414668 ~ 1414739 (-) True trnaw-cca_4
trnal-caa_2 other downstream 140573 1314314 ~ 1314426 (-) True trnal-caa_2
trnan-guu_16 other downstream 159229 1295696 ~ 1295770 (-) True trnan-guu_16
trnat-agu_2 other downstream 161055 1293871 ~ 1293944 (-) True trnat-agu_2
trnak-uuu_2 other upstream 16202 1471489 ~ 1471561 (-) True trnak-uuu_2
TU89874 other upstream 73783 1529070 ~ 1529513 (-) True G75770
trnal-caa_7 other upstream 113458 1568745 ~ 1568857 (-) True trnal-caa_7
trnat-agu_6 other upstream 183098 1638385 ~ 1638458 (-) True trnat-agu_6
trnar-ucu_5 other upstream 183476 1638763 ~ 1638852 (-) True trnar-ucu_5

Expression Profile