RNA id: TU90038


Basic Information

Item Value
RNA id TU90038
length 2198
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G75889
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1801272 ~ 1819183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAGATCCTTCAGGGCCGAAGCTGGGATATCGACATTGTCAAACGACCTTCCGGCACTCAACAGGATCAGCATCTGTGGTACACCCTCCAGTCGTCTGCTACCCGAGGAGGCAGTAAATACGTTGTCTCTGACGTACTGTAGAGCTGCCCCTATGTTTAGGGGCCTTCCTCCTTTGTGCCTCAAAGCTCTGACTGTGCCAAGAAGGTCCTCCTTTGTTGTGTATGTCTTAAGATAGAAATGGATATCAGCATCTCTGCTGAACTGGACTACAGAAACACGGTCTTTGTTCTCGCCTACATTCAACCTCTCCACCACTCGTTGAACAAAGTCTATCATTGCCGGGAACCCATTCCTATTGCCGTCTGACCCATCCAGCAGGAAAACAACATCTCTCCTTGGTACACGAGCCTCAACTAGGGATAATTAAGGttgaaaaatacagaacatcGTAAAGAAGTTAACAATAGGCTTGCTGTGCGAAGCAGCAGTCTGACACATGCTGGATCGATTTTACTGACTGCTCTACATGTCTagtaaaacttaaaataactCTGGGGAAAAAGGCCTCAAAATGATCGGCTTACCTATTGTTGTTGGAGAGATGCCTGTGGCTCCTACAAGTGCAGTGTTAATGATGGAGAGAAGCTGCTCTTGTACATTAGGGAGGTAAGTAAAGTCTGTCACTGAGAGTGTGGAACTAGGGTCATTTGAGATCTTCCGCAATTCATTGCTATCTGAGCCTACTGATCCCACAGAAAAGATCAAGACTCCAAGCTCTTTCAGGGATGAGGCTGGCACGTCGACATTATCAAATGACCTTCCTCCACTCAACAAAATCAATACCTGAGGAACACCCTGTAAACGTCTGCTTCCAGCCGAGGTGCTGAAAACGCTGTCCCTCACATACTGGAGAGCAATTCCTGTGTTCAGAGGTCTCCCTCCTTTGTGCCTCAGACCTCTAACGGTGTCGAGAATGCTCTCCTTTGTCGCGTATGTGTTGAGATAGAAATGCACCTCTGGATCTCTGCTGAATTGAGCTACAGACACATGGTCTCTCTCCTCTGATACATGCAATCTCTCCACAATGCTTTGAACGAAATCACGCATTGCTGGGAAATAATTCCTAGTACCATCTGAACCATCCAGAAGGAATACGACATCTCTCCGGTCAAATCTTTGGTCAACTACAGACAGTGGAATACAAAAAATGTCATATCAAACTTTCTTGGACAATTTTAAAAGTAACCTCTCTCCCATTCACAGTCTGTATTGTAGAAGAGTTGATTGAATtgccttgtctttttttttttttttctttttacaccaTTTGGCAGGAGTAGCTTGGTGACCATGCAAGGTACCTGAGACCTGACTGCAAGGGGAATTGCACAATTGCATTTCGGCTACAATCGTAGAGATGGCCTCCGAGATCTAGGCCATGTGTGCTAGaaactttataaaacataacTACCATACTCTCGAAACGGACTGAAGTAGTCTAAAACCCTGGTAAAGTATCTGTAAACTTACCTCGTGCATgctaaatacaattaaaaaaaaggtacatGGTATGGTGGAATTGCAAAACTGTCTGTGCTGTCAGTTTGATCACTGTTGTTAAAATATACCTTACCTATCACTGTAGGTATCACTGGCATTACGTCTAGAAGTGCAGTGCTGAGAGTGGTGTAAAATTGCTGCTGGACACTGCCTAGGTCAGAGAGCTCAGAAACTGTCTGAGCGTAGGAAGGACCACTTGCAATTCTCTCAATTTCACTGCTCACATTCCTGGTGCCAACACCAAAAATTAAGACTCCACTCTCTTTCAGGGCAGAGGCCAGTTGATCAACATTATCTGTTGACCTTGATCTCCTGAGCAGAATGAGGACACTAGGCACACCCTGTTGATGTCTActgccagcagaggcagtgaaCACATTTTCTCTCACATATTGGAGAGCTGACCCTGTGTTGACACGTCTCCCGCCTTTGTGCTTTACATTGCTGATGGCATTGAGGATTTCGTCTTTTGTTGAATAGGTATTCAGATAGAAATGCACCTCAGCATTTGTACTGTACTGCACCACTGAAACATGGTCCATACTCTCCTCAAAGTTAAATTTTTCCACTACCCTTTGTACAAAGTCAAGCATGGCAGGGAATCCATTCCTAGTCCCATCTGATCCATCCAGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90012 lncRNA downstream 78473 1722581 ~ 1722799 (-) True G75875
TU89942 lncRNA downstream 144424 1656373 ~ 1656848 (-) True G75814
TU89924 lncRNA downstream 208998 1592071 ~ 1592274 (-) False htr2aa
TU89841 lncRNA downstream 333373 1467662 ~ 1467899 (-) True G75740
TU89840 lncRNA downstream 345985 1454999 ~ 1455287 (-) True G75739
TU90017 lncRNA upstream 30054 1849237 ~ 1850224 (-) True G75880
TU90018 lncRNA upstream 30054 1849237 ~ 1873669 (-) False G75880
TU90097 lncRNA upstream 92013 1911196 ~ 1917438 (-) True G75925
TU90099 lncRNA upstream 93948 1913131 ~ 1925253 (-) True G75926
TU90101 lncRNA upstream 94834 1914017 ~ 1914729 (-) True G75927
XM_034304840.1 mRNA downstream 54241 1723257 ~ 1747031 (-) True mlphb
XM_026911002.2 mRNA downstream 177223 1615900 ~ 1624049 (-) True med4
XM_026911019.2 mRNA downstream 204793 1591955 ~ 1596479 (-) True htr2aa
XM_026911013.2 mRNA downstream 234485 1554942 ~ 1566787 (-) False LOC113524666
XM_034304412.1 mRNA downstream 235880 1554942 ~ 1565392 (-) True LOC113524666
XM_026919622.2 mRNA upstream 39079 1858262 ~ 1871493 (-) True cops8
XM_034304738.1 mRNA upstream 42970 1862153 ~ 1863790 (-) True trim63b
XM_026947295.2 mRNA upstream 130949 1950132 ~ 1986039 (-) True ranbp2
XM_026947297.2 mRNA upstream 130949 1950132 ~ 1985889 (-) False ranbp2
XM_026947296.2 mRNA upstream 130949 1950132 ~ 1985889 (-) False ranbp2
trnar-ucu_7 other downstream 126699 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 127087 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 138663 1662520 ~ 1662609 (-) True trnar-ucu_6
trnat-agu_7 other downstream 151146 1650053 ~ 1650126 (-) True trnat-agu_7
trnar-ucu_5 other downstream 162420 1638763 ~ 1638852 (-) True trnar-ucu_5
TU90190 other upstream 229840 2049023 ~ 2049385 (-) False LOC113547075
XR_004578243.1 other upstream 983704 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 985365 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 1120138 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1994296 3813479 ~ 3816036 (-) False faima

Expression Profile