RNA id: XM_026947281.2


Basic Information

Item Value
RNA id XM_026947281.2
length 3146
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC113547075
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2047779 ~ 2064298 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGGCTTGGATATCGGAGTTTTGCTGCCTTTGTGTAATCTTATCTCTGTCATCTTTAATTTCAGGATACATTCGGGaattatttacacatatacGACTGAAATTCTCCTTCCTGAAGTGCGCCTGAAAAGCTGAAGATGGCCATCCATGTGGAAGGATTGGTGGCGATCGCGCTCTTTTATCTGCTCATCTTATTTGTTGGAATTTGGGCAGcttggaaaaacaaaaactctgGGGTTGGATACAGTACAGACCAGAGTGAATCTATAATGGTGGGAGGACGGGACATTGGGCTCTTTGTCGGTGGATTTACTATGACCGCCACGTGGGTTGGTGGTGGATATATCAATGGAACAGCAGAATATGTGTATTTGCCTGGCTATGGACTGGCATGGGCACAGGCACCCTTTGGTTATGCACTTAGCTTGGTAGTAGGTGGTCTGTTCTTTGCCAAGCCCATGCGGTCCAGGGGATATGTGACCATGCTCGATCCCTTTCAGCAGCTTTATGGGAAGAGAATGGGTGGCCTTCTCTTTATACCAGCCTTGATGGGGGAAATTTTCTGGTCAGCAGCCATTTTGTCAGCACTGGGTGCCACCTTAAGTGTCATAGTggacatcaacatcaacatgtCTGTTATAATATCAGCGCTGATTGCCATCTTCTACACACTGGTGGGTGGGTTATACTCAGTGGCTTACACAGATGTGGTTCaacttttctgcatttttgtaGGCTTGTGGATCAGTGTACCTTTTGCTTTAGCCAACCCTGCAGTGTCAGACATCAGtgtgacagcaaagaaaaaagtatttcaGACTCCGTGGCTGGGCAAGATTGATTCTTCAGATGGTTGGATGTGGGCAGATAACTTTTGCCTACTGATGTTGGGGGGGATTCCCTGGCAGGTATATTTTCAACGCGTTCTTTCTGCTTCTTCAGCTACTTATGCCCAAGTCCTCTCGTTCCTGGCTGCCTTTGGCTGCCTCATTATGGCGCTCCCTTCCATGCTAATCGGAGCCATAGGGGCATCTACAGACTGGAACCAGACATCATATGGCTCTGTGCCACCGACAGAGAAAGATGAATCAGACATGATTCTGCCTATTGTGCTTCAACATCTTTGCCCACCTTTCATCTCATTCTTCGGCTTGGGGGCCATTTCAGCtgctgtgatgtcatcagcaGATTCGTCCATTCTTTCAGCAAGCTCAATGTTTGCACGCAACATCTACCAGCTTGCATTCCGTCAGTCGGCATCAGACCGAGAAATTGTCTGGGTGATGCGAATCACAATCTTTGTGTTTGGTGCTTTGGCCACGGCCATGGCTCTCCTGACCGGAACGGTTTATGGCTTGTGGTACCTGAGCTCGGATCTTGTCTATGTTATCATCTTTCCTCAGCTAATTAGTGTGCTCTTCATTAAGGGAACCAACACTTATGGTTCAGTAGCTGGCTACATCTTTGGCTTGCTTCTGAGAATCGGTGGTGGGGAACCTTACCTCAAGCTTCCGCCTTTCATCTACTACCCAGGTTGGTATGAAGAAGAGAAGGTGAACCATCTGACCAAAGAGGTGGAGCATGTTGTGGTGCAGAAGTTCCCTTTCAAGACTGTAGCCATGCTAGCTTCACTTTTGGGCAATGCCGTCTTCTCATACACAGCCAAGTATCTCTTTGAGAGTGGCACACTCTCTCCCAAGTATGACTTCTTGAATGCTGTGGTTGCCAAGCACAGCAAGGAAATCATGGACAAGACAATTCTTGTAAGCAATGACAACATCATCCTGTCAGAAATGGCTCCCGTTAAACCAAGGACTGCATCCTCCTTGGCAGGAACATTCATGAACAAGGAGGTCCTTACTGATGAAAGAGAAATCAGTACAGaactgaataatgaatgtgaATAGAGAGTTTCTGtgactgaaaatgaaactgATGTGTGATTAAGATTACTAAAACTTCATGCTGGTTTAATGAATTTTTGATATGTTAAGTTGCTACTCCAGAAAATaattcttaaaattaaaatctgacCTGTTGAATCAAAATGTCTAACAGAGAAGCTTTGTAGCCCTTGATCAGTAAGatataagtaaaatataaaatgaaaaaatatagatAGAAACCTAATTTATATTCTTTTTGCTCATGCTAGTCAgagctataatttttttttgtcattagtgtttattttataaagtgcTTTAGGAGTAGAATACATTTTTCAGTTCAGAAATCTCAAACTCATTCATTTACAGTTAGAGTTAATACACTAGCTAAGCACAGAAACAATGCCAATGACCGACCTTGGCTTAAAAACACAGTGCACATCAGGATATCCTCAATAATATGTACAGGCATGGCTGatgagaaatcctccacaggTGAAAAAGGCTCTTGTTAAGCTCTTCAgtgttctccatatttagctagttttCTAAACTTCTGTcaagtttgtttagatttggcAGGAGTGTGGCAAGTTCACAAGCCATTTCTGGTGACTTTAAGACAGAAACAGATTCAGTGCAAACTCATTTTTGTCGCAAGTCGATGAGATGAACGTAATGTAACATTACATCTTACATCGATAGGGCCCTGTATCattctgtataattttttttcagcagagttATATTCTGTAGGTTTTgggtcttcattttttttaaaactgatttcaACCTTTAAAAGTAACTGGTGATGAATGAAATTGATTTTACTAGAGAAGCTGATTTAGTGGTGTATAGATACTCTCTGTAATCTGGTGCTTGTGTGCAATATTGTCAAGACAGTATTTCTATGATGACATTTCTTATCaacattagcaacattagcaacATTTCTTATAATATTCACTGTGATAAATTCATTCACTAGTTGGTTggaataagtttaaaaaaaaaatgtaaaaaaatgctttatggTATCATGCAGTGTTGATATAGAATTTGCCATTAATTTTCTTTGCTGGTATATCTGTCCTGACATCAGGCAATgacaaatatgacaaatatgtCATGGTATCAGGCCAAATATCCACAATTTAATGAGTATGGACATTTTCCTTCTGGTTTTCCATCTAATAGTGGTGTGTACTGTTCTCCTTACAAAGCTTTAGTTAGAAATcataaattttgtttatttga

Function

GO: NA

KEGG:

id description
K14387 SLC5A7, CHT1; solute carrier family 5 (high affinity choline transporter), member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90126 lncRNA downstream 101603 1945973 ~ 1946176 (-) True G75947
TU90099 lncRNA downstream 122526 1913131 ~ 1925253 (-) True G75926
TU90097 lncRNA downstream 130341 1911196 ~ 1917438 (-) True G75925
TU90101 lncRNA downstream 133050 1914017 ~ 1914729 (-) True G75927
TU90018 lncRNA downstream 174110 1849237 ~ 1873669 (-) False G75880
TU90223 lncRNA upstream 49892 2114190 ~ 2114599 (-) True G76013
TU90277 lncRNA upstream 207569 2271867 ~ 2274639 (-) True G76057
TU90288 lncRNA upstream 236423 2300721 ~ 2300940 (-) True G76060
TU90329 lncRNA upstream 385421 2449719 ~ 2450949 (-) True G76093
TU90634 lncRNA upstream 466356 2530654 ~ 2530992 (-) True G76333
XM_026947298.2 mRNA downstream 49706 1988540 ~ 1998073 (-) True lims2
XM_026947295.2 mRNA downstream 61740 1950132 ~ 1986039 (-) True ranbp2
XM_026947297.2 mRNA downstream 61890 1950132 ~ 1985889 (-) False ranbp2
XM_026947296.2 mRNA downstream 61890 1950132 ~ 1985889 (-) False ranbp2
XM_034304738.1 mRNA downstream 183989 1862153 ~ 1863790 (-) True trim63b
XM_034304321.1 mRNA upstream 5249 2069547 ~ 2080413 (-) False LOC113546994
XM_026947133.2 mRNA upstream 5249 2069547 ~ 2080410 (-) False LOC113546994
XM_034304322.1 mRNA upstream 5249 2069547 ~ 2078756 (-) True LOC113546994
XM_026947134.2 mRNA upstream 5249 2069547 ~ 2074119 (-) False LOC113546994
XM_026936339.2 mRNA upstream 170512 2234810 ~ 2246620 (-) False LOC113540088
TU90050 other downstream 244134 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 373206 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 373594 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 385170 1662520 ~ 1662609 (-) True trnar-ucu_6
trnat-agu_7 other downstream 397653 1650053 ~ 1650126 (-) True trnat-agu_7
XR_004578243.1 other upstream 738589 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 740250 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 875023 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1749181 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2775662 4839960 ~ 4844879 (-) True G77283

Expression Profile