RNA id: TU90329


Basic Information

Item Value
RNA id TU90329
length 1231
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G76093
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2449719 ~ 2450949 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTAATGAAAACAACCTGCATCAGCAGTCCAAAAGTATTCAGTTTTTGCAGGCACGCACCCAGGCATTATCTATATTGCCTTCTGCACAGCACGAATGGCACCAATttacacaattcacacacaaaactgGCCACTGCTAATTGTCCAGAGTTTAGTAAATTAAACACAATCAGCTGCACTTTCCATTTCTATACCCTTTTTTGTACTGACTACCCACTCCTGATGAGGGAGAGAAGCCCTGCATAAACTGTACATTTAGGCTTATACGTCAGTTTCTTACATTACATACAGAATTCTTTGCACAGAATGTGGCATAATTACGACGGAAATCTGGCACAAACAGCTTAATACATGGTCCCCAGTCCCCTGTATTATTGCTTTTGACCAATCATGAGGTTGCACACGAGGTTATATCTGTTTGTCATCCATCACAAGGATGAAAACACTTAAATAATAgagtcataaataataaaaaagacagatgctaaatataaataatacacaaacaGTTCTACAGTGCTATCGGGGTTAAAAGAATTGCTAGGAAGAGGACACTTGTGTACAGATTTGCACAAAAGAAGTTCACTTCACAAAGCCTCATTGGAACTACAGTTAGAATCTTGTTTTCTGGTCAGACGATActaaaatcaaacattttagcCATGAATACTATCTGTATCCTGGGTTTAAAAAAAGGGTACAAAGAAAAACCCCACtggggctgttttgtggctggcAGGCCTTATAAACTTTAATGAAGATTAATGGCATCATTAATTATGCCGAGTATCATGATAAGCAATTGTAGCAGGTGGGGACGTGATTTAGCGTGGGTCTGCTCTGGGAGGAAAGTGTTTGGGGACGAGCTAAGGGGGTAATGACTAACATGGCACCCCTGAGCCTTTCTGTCTGtgatctttctttctgtttctctccctcgTTGAGCAGTGAGCTGAGCGCATGTGTGTGGCCAAGCAGAAAGTGGCAAACGAGCTGGAAGCAAATAGCATTTCAAAACAAACAGGGTAGGAATTCTGCAACATTCtttgttttgaacattttttcattattttactgACTGACCAGTGCCTGTGTTCTCTAAGTGTTGCTACAATGGTATATTTGAAAAACTGTTTTGATATAATAAAGCAATATAGCCAACTCTCCCTCAAAGAAGCCTCAAATATCAATCGCtgcatgtgttttatatactaattgctgattttttt

Function

GO: NA

KEGG:

id description
ko04911 Insulin secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90288 lncRNA downstream 148779 2300721 ~ 2300940 (-) True G76060
TU90277 lncRNA downstream 175080 2271867 ~ 2274639 (-) True G76057
TU90223 lncRNA downstream 335120 2114190 ~ 2114599 (-) True G76013
TU90126 lncRNA downstream 503543 1945973 ~ 1946176 (-) True G75947
TU90099 lncRNA downstream 524466 1913131 ~ 1925253 (-) True G75926
TU90634 lncRNA upstream 79705 2530654 ~ 2530992 (-) True G76333
TU90626 lncRNA upstream 105557 2556506 ~ 2559152 (-) True G76325
TU90615 lncRNA upstream 233567 2684516 ~ 2753806 (-) False ifngr2
XR_004578280.1 lncRNA upstream 442427 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 463451 2914400 ~ 2917047 (-) True G76400
XM_026936339.2 mRNA downstream 203099 2234810 ~ 2246620 (-) False LOC113540088
XM_026936346.2 mRNA downstream 203104 2234810 ~ 2246615 (-) False LOC113540088
XM_034304219.1 mRNA downstream 203110 2234810 ~ 2246609 (-) False LOC113540088
XM_034304213.1 mRNA downstream 203110 2234810 ~ 2246609 (-) False LOC113540088
XM_034304212.1 mRNA downstream 203110 2234810 ~ 2246609 (-) False LOC113540088
XM_026936246.2 mRNA upstream 30645 2481594 ~ 2522383 (-) False LOC113540058
XM_034304201.1 mRNA upstream 32081 2483030 ~ 2522385 (-) True LOC113540058
XM_034304837.1 mRNA upstream 215907 2666856 ~ 2680900 (-) True il1rl1
XM_034304836.1 mRNA upstream 215907 2666856 ~ 2678131 (-) False il1rl1
XM_026945240.2 mRNA upstream 233559 2684508 ~ 2698756 (-) True ifngr2
TU90190 other downstream 400334 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 646074 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 775146 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 775534 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 787110 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 351938 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 353599 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 488372 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1362530 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2389011 4839960 ~ 4844879 (-) True G77283

Expression Profile