RNA id: XM_026945240.2


Basic Information

Item Value
RNA id XM_026945240.2
length 4067
RNA type mRNA
GC content 0.40
exon number 7
gene id ifngr2
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2684508 ~ 2753806 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTTTTATCCACAAAAACCGCAGAGGCGAGGAGGCAGCACAGCCGCCGCTAAAGCAGCGCAAACACCAGGAAACTGACATTTTCACCTTTACTGTACATTTCCTACACAAACCAAATCAGTAGACAGTGTGCGCCTGTAGCTGCCAGGACTAGCCTACGCCGCTTTATCGTAACACGGCTTTGTTATTTTCACTTCTGCATTTCTTCTCAGCCGGAAGAAAGTAGTTAGTACCGTATCCCAAACGACCccagtgtgtgtggagaagtgcactacacagggccCGAGAGCGCGGCGCCTGCACCCTACCTAGCCCACTGCGTGTGCGTTTGGGATTGGGCCCTGCGGAGTGTGGTGTGGAAGATGGCCTGGATGTGGCCGACATGATCGTCGTTATGGACTGGAGAAGAGCTTTTCTTGTGTGTGAGGTGTTCCTCACAATACACTGTGCATGTTCGAGTGTGTTATCGCCACCACAACGTGTTAAAGTCGAATCGTCAGTGTTAACCTGGAATGGTCCAAAAAACCACATTAACATCACGTACGTCGTTCAGTACAACACGACATTGAATGACTGGCGTGATGTGTACAACGGCACTCAGCAGCAGTTCAACTTCACGGCAGCTGCTGAGGATTTCTATGGGACGAGATTTCGTGTGCAGTCAAAGAGAGGGAACCAAACATCAGCCTGGGAGATGTCAAAGCTAGTCCAGTGTGCACACCTTCACACATGTGCTCCTATAATAGAGCTGAAggtggagacagacagagtgcaCCTGTGGATGAAACACAGAGACCCGAGTCTGGAGGAGAAGGAAGGTGGGCACATCAGCTTCAACCCTCTGTACTGGAAAAGAAACAGCAATAATAAAGAGGAGCTCAGTGCCACTTCTACCCACCTCGTCATTGAACACCTTGAGTCGGGACAGGAATACTGCTTCCAGGTCGAGTATTTGCTTTTGCACAAGCCCCATGGAAAGCCCAGCCGTGAAATATGTAAAGTGATCCCCGAAACATcCAAACAGCGAAATGTGCGTGTTATCATGTTAGGTGTGCTAACAGTAGCGGGAATGGCTGTCCTGGGATGTTGCCTGTATTTTgtttacacacattacaaaaGGATTAAAGCACTGCTTCAGCCCCCTCTGGACATCCCTGATCATTTTGAAGAGttttttttcagtgaattcCCTCAGCACCCAGTCGCTCGTCCTGGTAACCAAGAGGTGGAGTCTTATGACTTTGTAAATTTCGTAGAGGAGGTTGCAGAAGACGAGGAGAGATGTGACTTGGAAAACGAGAAGAAAATGTGAGCTCCACATAGTGTGTACACAGCGTCTTCTCCTGAGGAAAGCAGGAGGAGTCTGAACActgtttttaatactttataGTTTCATACATTGACCTCACGCACTATCCTCTTGCTTACTTTCAATGAGGTTGTCCAATGCATGAAAAGGATCCATTACACATGACTGTTCAGAAGAACCGTGTGGTTCAAAGGAGCCAGCCTCATGACTATGGGCACtaattttgtattttggttGGCTACATTTAGGTAAAATAATTAGAGAAATGAAATAATCCTGGCAGAGTTGTGACTGTTATTTACTGGTAACgtgtaactttatttttcagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgattaggAGAAAGGTGCACTTTGACACTTTAAACTTGAATAAAAACTGCTTTTGAGCGATGATCATGACATGCTGCAATGCGGAATTGTTATTCTGTGAACGAGACTGTGAGTAACTGTGGCTGGCTCATAAGGTATGATAAGGTATGAGCAACctaataatatattttctgtATGTCACAGTTTCTGCTTACAGCTCACTATTTTCAAAGTGAATGTCATACAGAATTCAGTAATTTGGTTGGAAAATTGCTTAATCTTTATTAAACAGCCTTGTTAAGAGAGTTGCTCTTAGTCTCCAGTAGTTTTACAATGTAACCCTACCTTACAATGTCTAATTTCCCACCTGACACTTTTAGCTTCAGGCAccgagcctcatttatcaagctggatatgatatttattcataaatcattcatactagcatttacacaaaaaatttggcaatcatgaaaatcccataaatgCAGAAGAAGTCACTcttgctcctgagtgtgtgtaaatttacgcataagaagactaactaatgtaaacctcgactcgATccacttcaaatcatataatttgcatggattactgcacttttatatctggaatgtACTGTTGAGTTTCAATCACTTATTTAACAgagtttacagcatttagcagacgcccttatccagagcgacttacagaagagcTTTATCGCTATCAAAAACACGTCCTCATGCGAGTTCACCAGGTCAGGGACTAAAAGTAGCATCGAGAACATTTCTTGAAAccagttgttttatattatcggaattaattaaagaaagtgTGAATAAAGAAAGTGTGAATAAAGAAAGTGTGCCAACACAAACtcataaattcagaaaaataaaactattcttataacaaaagaaatggtgccGTATGAGCGAAGTACGGGTCGTTCTGTCTGCGCGGAGCAGTAAGCTGTAAACAACTGCCTGAGCTGATGGGGATTtagcactttattattattattattattattattattattaattaaacattttcaaactaacttccacttctgcctttcagcTTTTACCCGGATCGTTCttttcgtgctcccagctgtctgtgcacttgaacttttatggaCTTTTAtgggcgtcactacatgcaTATGAGCTGTGTCAGAAATTCGCTTTGCACTTTATAGGTGATCAGCAAACGCAcacaagtacaaagaaaatcaatgtTTCTCAAACGTttgtaaatccagtggaaaattttagtttggtttggcttatgcaaacatttacacacacagttactaaaagcttgataaatgaggcccagtgacACAAAGCATTATAAAGGTGATATGCTGCACCTGGTCATTACTTTTTGTGAATTCTTTAGCTGTACCACTGTAGCATAATGTTACTGAAGTTCTGTTACAAAAATCATCCCACCACGTTTGTAATAATACCCTACGCAGCACTTTGTTCAAGACTTTTTGTGTTCTGATGATTCAGATTGCATAAAATAACAGCCACAGTAAAACTTACCGTTGGACAGAATACTATTAAAAGGattgtactgtctgttctgatCTTCATCTCATGAGACTCTGAAAGAGATTTCTTGTAGAATGGGTCACGGCCCCTCCTGAACCTGAGAAGCTGCTGCACAGTTTCTTGCATTTTGGCAAAGGTTGTGTTCTTATGATGAAATCACAGCCACTAAAATCCTCACTGCTGAATTGTCTCCCAtagtataaatgtttataaccAGTCCAGCCTTCCTAACTCCTGGTAAACATACTAAACATTACTATGTTCTTGCGTAGTTGTTTGTTAGCAAGAAAGCCTTAAAgcgttttgttgttttgaacaTAGATGCAgtttgcctttgttttttttgttgttgttttacctTCTGTTCTACCTTCTGTCTGCTACTTAGCAATGGGTGTACTGTTCACAGGTCATGTTGACATTGGGATGAGACagaaattaatatttgaaatgacGAACTGTAAATACATCTGTTTTaggggaacaaaaaaaaaaaaaagattttctcaTGCCTGGAGACACTCCTACCAGCAGATGTGTATAATCAGTTGTGAGTGCAAATAAGACATGGAGTAAATTGACGCAGAGTTAATTTCTTCCTTCACTCAcaaatttgtttgattttttgcaaaaaaaaaaaaaaaaaaaaagtatatgtgTGCTAATAATCTTTAGTTTTCTCAATCATAATGACATTAATTATATCCACACATTTCACTATTATGAGTAAATGTTGGGACCCTCTTTTGATCCTGAGGTTTCAAACCTGAGAACAGTTTATTACTGATGAACTTGGTTGTATTTCTCCATTATGTATTGATTTTTTCTGcggtaaataataaaaatgtgagtGTTTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90626 lncRNA downstream 125356 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 153516 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 233559 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 383568 2300721 ~ 2300940 (-) True G76060
TU90277 lncRNA downstream 409869 2271867 ~ 2274639 (-) True G76057
XR_004578280.1 lncRNA upstream 194620 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 215644 2914400 ~ 2917047 (-) True G76400
TU90778 lncRNA upstream 237325 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 266510 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA upstream 266639 2965395 ~ 2966533 (-) False G76462
XM_034304837.1 mRNA downstream 3608 2666856 ~ 2680900 (-) True il1rl1
XM_034304836.1 mRNA downstream 6377 2666856 ~ 2678131 (-) False il1rl1
XM_034304201.1 mRNA downstream 162123 2483030 ~ 2522385 (-) True LOC113540058
XM_026936246.2 mRNA downstream 162125 2481594 ~ 2522383 (-) False LOC113540058
XM_034304215.1 mRNA downstream 437929 2234810 ~ 2246579 (-) False LOC113540088
XM_026945215.2 mRNA upstream 5604 2704360 ~ 2712278 (-) True LOC113545737
XM_026945224.2 mRNA upstream 7573 2706329 ~ 2712278 (-) False LOC113545737
XM_026945208.2 mRNA upstream 15256 2714012 ~ 2732151 (-) True LOC113545730
XM_026938245.2 mRNA upstream 35428 2734184 ~ 2743215 (-) True crfb4
XM_034304181.1 mRNA upstream 35429 2734185 ~ 2743220 (-) False crfb4
TU90190 other downstream 635123 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 880863 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 1009935 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 1010323 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 1021899 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 104131 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 105792 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 240565 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1114723 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2141204 4839960 ~ 4844879 (-) True G77283

Expression Profile