RNA id: TU90707


Basic Information

Item Value
RNA id TU90707
length 2608
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G76400
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2914400 ~ 2917047 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAATTTGATTATGTTTATTTGAAACCCACAGAATTTATGTTCAGTCATGGCACTTCAACATCACAAACCCGTATGTCGCTTCCACAGATCTGTTCTCGAGGCTGACGTCTCTGTGTAGCTACAATAAAAACTCTTAAATCCTGATCCTGAAATTCATCCTGCAAactgattacacacactgcctgtCCTATGCTTTTCAAAAAGCTTTTCATAAATCTATATCGATTAGCAATAACAGCATCCTTGTTAATATTCTATCCATAGATAGAAAGGTGATGTGAGCTGtatgtttgtaaaaataaactcCTCTAGCAGCTCTGCCAGCTCGTCGCAGGACGTCCCTGAGGCGTGTGGACCTGGTTGGAGAAACTCTATTGGGTTAAGGCGGGGTGCATATTGCAGGCAGGTGGTGTCCGTTTCAGATCCAACATGCACATAACAACTTTCAGATCTCAGAATAAATATGATCATGGACACGTTTTTGTTCCAGTTTTGACCACTTTTTATAACTCAGACATTGATGAGATGCATTTATAGTTTCCCAGCATACAGTGTGCTAAAACAGGAGACGTCCACTTTAAAGACAATgactctttttgtttttgagggCGAGCTGGTGACATCGCCGCCGTAGCGTGAAAGCTCaaagcaaacacaaaaacacattcctTAAACCTTCTTAAACCAACAAAGCAACATGACACAACATCTCAAACAATCCAACAATACCAACATTTCCAGTTCAAAGCTCTCACATCATGAAGAGATGAGATATTATATTCTAGTCAACAGATCACAGCCACTTACAATATTCCTTACAGCCAATACTGTATGTTAATACTGTATCAACCAAATACCAACTCCAATTAACCTCAGGCTGTGTTTGTGGACGTCTGAGAATTCTTTGCACCAACATAACTTAACTCTTTATTTCCCAACAACAATCTACCTCTCACTTATAAAATCACTTCATCTCCAACTACCAACGTGTCACAAATATCCTCCGGCATCCCACATGTTCTAGACAAACACGATCTGGAATTTAAACACTCGCTTCACTGATAttcttaataaaatgaaatatttcaagaaaaaaaaaggaaaaaacttaGACTTGATCCAGTTTTGAGGACAGAATCATTGTGCATGGTGAACAGAGACGAATGCATATATTCAAGTCAGATTATGTGGCATAATAATCTGACAAATGATCTGAATAAAGCATTTAATCTATATAGAGGCATAAAAAAACTGTATTGGCAAATTGTGAAGCAAACCCTGAGAAAAGGCACACAATGaatacactattttttttttcttccccagcAGAAAATACTAGATAATCTGGTCTGACAAGTTAAAAGCGCCTGATATAACCCAGATGAGTGCATAGATTACAAAAcctgcaaaaaaattaaacacaagcTGTCCATACAGCTGTCCATTTCCTTCCTGACTTCATTTGCTtggaattaaaaaacaaaaccacaactACTTTTTATAAGAGCTACAAAAATATCTCCGTTTTAAAATGGGCTcagattaataaaattttttataaaGATTTTCCCTCTTCCTTCCCTTCATATCTGACCAAGGCACACAGATGTCAAGAGATTAAGTACTTTATGGCAGTCCTCCAAATCTGTTACTAAGGGGAAGTGCATATTGCAAAAAAACCCAGATCTGAGTAATTCAGGGTGTGGTGTGCGAATTAAATTGAGCAACGATGCCCCAAACAGggcaaatcacacacacacacacacacacacacacacacacagcactggtGGCAGGAATAATAACATTACTATCATTAATCTTTGACATTACTAAATACAGTGAGCCCCACAATCCAATGCcctgtttatttataataagcTCCTGCTAGTTTCCCCTGCAGTCCAGCATATTGTGACTTGGAGCACCGAAGAGCAATCACAATTAATGAGAACAACAATTAGACAGAAAAACTAAACCCAACATTCCTACTATTAAAACATTGCTGGTTTAGAGGAACCATTGgccttattttcttattttcctaCTTTAAAATAACGCACCTTATTGAAACTCAGTGTCAAataaatattccaaaaaaaaaaaaaaaaaaaaaacatatataatggagcaaattaaaaacacaaacacataataaaACCACATACAAGAGAAAAAGAGCTGCTCGAATAACCGAGATGAAAGAAGAGTGATTTAGTTACAGAAACCTCATTATACATGTTATTGTGCAGCAGGAATTTGCTCTAGCATTAGCAGATCGTCTTTGGTGTGGTCCCAAATGTAATTCAGAGGATTAGGATGGAAAATCTTGCCCTAATCAAAAGGGGAATGTGATTCCAGAAGGTGTTTCAGATGCTGCTGTCCCTCGCCGCCTGTGCGTCATCCTCGAAGCGGAACCTCTTGGACTGCGGTGAATCCAGAATGTTCTCCTTGTCTTCGAGGTCCTCGGGAGGAGACGCCCACTTGGCACCGCCGCTGCGCTCTCGGGGAACACGTGGGGTTACTGGAGGAGGAGAGAGTTCGGGCCCTATGCCCTGCTGCCACAGCCATGGGTGACTCAGACAGTCAGTGGCGCTCGGCCGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578280.1 lncRNA downstream 17196 2893376 ~ 2897204 (-) True LOC117597440
TU90615 lncRNA downstream 160594 2684516 ~ 2753806 (-) False ifngr2
TU90626 lncRNA downstream 355248 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 383408 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 463451 2449719 ~ 2450949 (-) True G76093
TU90778 lncRNA upstream 19034 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 48219 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA upstream 48348 2965395 ~ 2966533 (-) False G76462
TU90910 lncRNA upstream 675771 3592818 ~ 3595411 (-) True G76570
TU90968 lncRNA upstream 869909 3786956 ~ 3805597 (-) False faima
XM_034304223.1 mRNA downstream 84579 2823816 ~ 2829821 (-) False tyw5
XM_026942700.2 mRNA downstream 84835 2823816 ~ 2829565 (-) True tyw5
XM_026938295.2 mRNA downstream 108544 2801006 ~ 2805856 (-) False LOC113541352
XM_026938287.2 mRNA downstream 108545 2801006 ~ 2805855 (-) True LOC113541352
XM_026938224.2 mRNA downstream 115399 2775840 ~ 2799001 (-) False crfb1
XM_026937158.2 mRNA upstream 2259 2919306 ~ 2920007 (-) True c5h2orf69
XM_026939466.2 mRNA upstream 11774 2928821 ~ 2953801 (-) True nabp1a
XM_026932051.2 mRNA upstream 27227 2944274 ~ 2960366 (-) True cavin2a
XM_034304728.1 mRNA upstream 51633 2968680 ~ 3060237 (-) True tmeff2a
XM_034304802.1 mRNA upstream 716945 3633992 ~ 3745380 (-) True dnah7
XR_004578243.1 other downstream 108537 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other downstream 108537 2804548 ~ 2805863 (-) False LOC113541352
TU90190 other downstream 865015 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 1110755 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 1239827 1674484 ~ 1674573 (-) True trnar-ucu_7
trnas-cga other upstream 22274 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 896432 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 1922913 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 2414537 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 3406106 6323153 ~ 6324680 (-) False LOC117597343

Expression Profile