RNA id: TU90786


Basic Information

Item Value
RNA id TU90786
length 1268
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G76462
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2965266 ~ 2966533 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcatttttctcatttgtacAGGAAGTGCCCACGGACTAACCGTATCAACCGTCAAAAGCAAAACGTCACGCACTACAACTCGGAGAACACCCTGCGCGCCTCCACCCGCCTCATCTAAGTGTCGGGAGAAGCCTCACAGTCGTGGGATAAGTAGTAACAAGAGATTAAAGATACAAAAACAGCCACTCCCTCCTGCCTCCTGGTGCAACAAGATGGACCATACCGGACCGTACTACTAGACAGCGGGGAGGGGGTGATGGTGGGGTTGTAGGTGAGGCTGAGGGGGGTGACACCCGGTGCCTTCTACCTGTGGCACAGGACACAAACTGAGAGGATCTTAGGACATTACATTAGGACAAGTCCTACTATTTGGTTATGTATGGGTAATATTTCCActagtttctttgttttgtcttggTGGGGtctttttctgtaaatgtaaataaataatttatatcaCAAAACAGATAATAGCATGCAACTGTATTTTTATGGTGGTTGCCAATTTGGCAAGAATAGGGgttcttaaatttttttatagaCAACACTACATATGTGGGTTAATGTAAATTTTAGATTAATGATTTTGCTATGAACACCCTCTCACAGCCTGATATTCGTTATATGTTACACCTGTTCTGACCACTAGGGGGTAGATTTGTGCAAAATAATGTAACTTCTTGTGCCTTAGATCAGAGCTTATCAGAACTGACCCATTAAATGCAATTACAGTTGTAACATCATATTCGACATTGgtaatcttaaaaaaaactgcatacaCAATGCACCTCACATTGAGCTGTCCAACCAAATCTTCACAAAAAAAGTAGCCGGTATGTGACCAATGTATATGTCAATATCACTCAACATAGCTAACACACTGATTTACATACGGATTCACAAACTGATTCACATATTCTGCCAACAGCGTAAGAgcgaaaaataataattaactaataTAATTTGTAGCTGATATTTTATAGTAAGACAATGACCTTCTCCTGCACTATCCCTTCCAAGACCTAATCTGGGGGGTCTATTACTGTCAAATAATGGATAGAAGTTTTCAGACCAGTACTGGACATACTGATTCTGTAGACCAACAATATATATAATCAGGTCATGTATGTTGTAAAACCGGCACTAACAGAcatttttatatctatatttatacatatatatatcaaattCTTGAAATTCTTGACAGTTTTGGTCTAGACACTCAAAGTGAAACAATGCATAAttgtattaaacattaaaaaagttcC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90778 lncRNA downstream 28703 2936081 ~ 2936563 (-) True G76455
TU90707 lncRNA downstream 48219 2914400 ~ 2917047 (-) True G76400
XR_004578280.1 lncRNA downstream 68062 2893376 ~ 2897204 (-) True LOC117597440
TU90615 lncRNA downstream 211460 2684516 ~ 2753806 (-) False ifngr2
TU90626 lncRNA downstream 406114 2556506 ~ 2559152 (-) True G76325
TU90910 lncRNA upstream 626285 3592818 ~ 3595411 (-) True G76570
TU90968 lncRNA upstream 820423 3786956 ~ 3805597 (-) False faima
TU90966 lncRNA upstream 842659 3809192 ~ 3816036 (-) True faima
TU91019 lncRNA upstream 884863 3851396 ~ 3852207 (-) True G76658
TU91051 lncRNA upstream 971261 3937794 ~ 3938000 (-) True G76682
XM_026932051.2 mRNA downstream 4900 2944274 ~ 2960366 (-) True cavin2a
XM_026939466.2 mRNA downstream 11465 2928821 ~ 2953801 (-) True nabp1a
XM_026937158.2 mRNA downstream 45259 2919306 ~ 2920007 (-) True c5h2orf69
XM_034304223.1 mRNA downstream 135445 2823816 ~ 2829821 (-) False tyw5
XM_026942700.2 mRNA downstream 135701 2823816 ~ 2829565 (-) True tyw5
XM_034304728.1 mRNA upstream 2147 2968680 ~ 3060237 (-) True tmeff2a
XM_034304802.1 mRNA upstream 667459 3633992 ~ 3745380 (-) True dnah7
XM_034304801.1 mRNA upstream 668056 3634589 ~ 3745382 (-) False dnah7
XM_034304799.1 mRNA upstream 668056 3634589 ~ 3745356 (-) False dnah7
XM_026934130.2 mRNA upstream 803701 3770234 ~ 3784393 (-) False parp14rs1
trnas-cga other downstream 25864 2939321 ~ 2939402 (-) True trnas-cga
XR_004578243.1 other downstream 159403 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other downstream 159403 2804548 ~ 2805863 (-) False LOC113541352
TU90190 other downstream 915881 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 1161621 1797982 ~ 1803645 (-) True G75893
TU90967 other upstream 846946 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 1873427 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 2365051 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 3356620 6323153 ~ 6324680 (-) False LOC117597343
TU92645 other upstream 3562513 6529046 ~ 6564571 (-) False G78058

Expression Profile