RNA id: TU90968


Basic Information

Item Value
RNA id TU90968
length 1523
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id faima
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 3786956 ~ 3816059 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTACATTAGAATAAATGGGAGCGTAAGTGTACCTTCAGTGTGTCAGTATCCTTTGGAAAAACTacgaaaaatatttttatttttgagcctTTATAGTATTTAGAAAATTCCACTACTGCAGTGGTCATAATTTGAGAAACTTCATCTTTTCCAAGGCCAAGGTTGCCCGTCCCGAGAGCAGGAAAAGATATAGATGACCAACCTTTAGTTCTTGCCATCGTAAGGCAATTTGTGACCACCGAGTGAAGAATCTAGAAAAGACAATGTCAACATTCAAGACTTAAAACATCAGCCATGATGAAGGGCTGAATAAACTTTAGATGCTAAATCAGAGTGCTAATGAATTACTTGATGTAAACTTCTAGAATGCTTGACTGGTTATATATTAGAAATCCAACCTTATTGGCCTTATCATCAGTGGTGCTTTTTGGCACACAGACAGTGTGGTACACTGCCATACAGTTCAGTTTACAGCCAGAAGTTGGAATAATGTCACCCTCGTGAACATGTCCATGTTTAAGACGTTTTATTTCATCCTGAATCTTCCGGCCAGCTTTTTTCAGCAGAGCAGCTGAAACCTGTCCTTTTGATAAATCTAAGTTGGGTCCTATCGTGTTCACGATGACATCTgtctacaaacacaaacTGTCTCATTCTCAATGGCACCCTTTTTGAGGTGGAGAGTCACATTCCCCAGATCTAGACTGGAGACTGGAGACTGGGTTGGTGCATTGCCCTGGTTTTGCATTGGCATTAGGTCAGATGGCCCCAGAATTTCCCTGCAGGCTCTGTGCATCTGTTGAACTGATGGATCATCATTATTCACCAGACGAACTTCAAGGTTCCCGGCTTCTGGATTGCGTTTATCACTGAATGACTTCACTGTAGCTACAATGATTTCAGCACATTTTTGCAGTGGAAAATTGTAAAGCCCTGAGCTAATTGCAGGGATTGCAACAGACTGCATGTTTTCATAGTTAGCTTTTCGCAAGATACTCCAAATAGTTTTCTCTAAAAGGTCTGATGCATCCCTAAGTTCTGTCTTTGTTGCCTTTAGTGATACACAGGGTCCAACGGCGTGTATGATCATTTTACAAGGGAGATTTCCAGCTCGAGTGGCAACAGCTTCACCTGTGTGAACTTTACCCTTTTGTTTTATGATTTCATCACTCCATTGCTGAATCATACGACCTCCAGCTCGACTCAGAGCTAGAGCAAGTCCTGCTCCATGATTTAAATGCTCATTTGCTGCATTTACCACAGCATCAACCTTATGTGTAGTAAGATCATCTTTCCACACTGATACTTTCAGACTCTTAGACAGCTGTTTGCTGTACTTAATGTCAGGCACAATGGTTGCTTTGCTGTGGGAAAAGGATGAAGCTGTATGATCCTCCAAATTGTGGATCTGAGCGGTACAACCAAATTTTCCTTCTAGCCCACGGCAAAATGCAGAGCTACTGCGTTTCAGAATCTCAATCCCCTCTGGCTGCAACAGAATAAATGCCTTGCCATCTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90910 lncRNA downstream 191545 3592818 ~ 3595411 (-) True G76570
TU90786 lncRNA downstream 820423 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA downstream 820423 2965395 ~ 2966533 (-) False G76462
TU90778 lncRNA downstream 850393 2936081 ~ 2936563 (-) True G76455
TU90707 lncRNA downstream 869909 2914400 ~ 2917047 (-) True G76400
TU90966 lncRNA upstream 3595 3809192 ~ 3816036 (-) True faima
TU91019 lncRNA upstream 45799 3851396 ~ 3852207 (-) True G76658
TU91051 lncRNA upstream 132197 3937794 ~ 3938000 (-) True G76682
TU91057 lncRNA upstream 162276 3967873 ~ 3968077 (-) True G76688
TU91180 lncRNA upstream 200097 4005694 ~ 4005908 (-) True G76794
XM_026934130.2 mRNA downstream 2563 3770234 ~ 3784393 (-) False parp14rs1
XM_026934120.2 mRNA downstream 2563 3770234 ~ 3784393 (-) True parp14rs1
XM_026934140.2 mRNA downstream 2563 3772777 ~ 3784393 (-) False parp14rs1
XM_034304801.1 mRNA downstream 41574 3634589 ~ 3745382 (-) False dnah7
XM_034304802.1 mRNA downstream 41576 3633992 ~ 3745380 (-) True dnah7
XM_034304686.1 mRNA upstream 4917 3810514 ~ 3816059 (-) False faima
XM_026936728.2 mRNA upstream 86883 3892480 ~ 3923274 (-) True gypc
XM_026936716.2 mRNA upstream 198129 4003726 ~ 4126493 (-) False cntnap5a
XM_026936707.2 mRNA upstream 198129 4003726 ~ 4126493 (-) True cntnap5a
XM_026910834.2 mRNA upstream 484475 4290072 ~ 4294136 (-) True sfrp2
trnas-cga other downstream 847554 2939321 ~ 2939402 (-) True trnas-cga
XR_004578243.1 other downstream 981093 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other downstream 981093 2804548 ~ 2805863 (-) False LOC113541352
TU90190 other downstream 1737571 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 1983311 1797982 ~ 1803645 (-) True G75893
TU90967 other upstream 7882 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 1034363 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 1525987 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 2517556 6323153 ~ 6324680 (-) False LOC117597343
TU92645 other upstream 2723449 6529046 ~ 6564571 (-) False G78058

Expression Profile