RNA id: XM_034304686.1


Basic Information

Item Value
RNA id XM_034304686.1
length 1372
RNA type mRNA
GC content 0.45
exon number 6
gene id faima
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 3786956 ~ 3816059 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaagaagaagcggCAGAAGAAGAACTGTTACTATGGTTACATGTGTTGTTAGGCAGATACCTGGTttgttgttagctagctagcttttcGGGGCTACTGAGCTAACTAGGCGAATTCTGGACAAACGGTAACTTGGAGCACCAGTTTTGATCTCTTGGCAGAGGGATCATGTCCGGAGACCTGGTTGGGGTTTGGGACGTGGCCCTGAGTGATGGGGTTCACAGGATTGAATTTGAACATGGCACAACCACGGGGAAACGCGTCATCCATGTAGATGGCAAGGAGGTCCTGAGGAGAGACTGGATGTTCAAGCTGGTCGGCAAGGAGACGTTTTACGTAGGAAgcacagacacaaaggccaccATTAACATTGACGCGGTGAGTGGGTTCGCCTACGAATACACACTGGAGATCAACGGCAAGAGCCTGAAGAAATACATGGAGAACCGTTCTAAGGTGACATCTGAGACAAAACTTTACAACACATCAGTAAATGATTGGatgtgctctctctcttcctgaaCAGAGAAAGACACCATGGACATTTGGTGCAATGGGCAGAAAATGGAGACAGCCGGGGAGTTTGTGGATGACGGCACAGAGACGCACTTCACTCTAGGCGACCATGACTGCTGCATCAAGGCCGTGAGCAGCGGGAGGAGGAGAGACGGCATCATCCACACGCTCCTGGTGGACGGCAATGAAATGGCCGAGGCCAGCGAATGATCGTCTGTGAATCCTGTGATGTAGGAAGTTGTGGTTTTAACCCTCATGTTCTTCACTACAGTGGTTGTCCTACTGACTCAGGCCATCACTTTAGAATTTAAAGCAATACAGATGTATCATTTAGTTTAAATTCGCAGTACATTCCCAGTAATCGCAGCACTAAGAATGAGAAATGATATCAGTAGATGCAGGAAAGCACTTCCTGTATGCTGAGAGCACAGGCAAAGGGAGCTGTCATTTGTACTTCAGATTTAACACTTAAAAGTGACCTGAAAGTAATTCatgtaagaatttttttttcttttttcttaagaaACTAAGCCAAATTCATGCTGGCAACATTAGTTTTAGtgtgaagaaaatgaaaatggggaaaaatgggaGCCAAAGAGAACACAAGGGTTAAACTGATCTGGCCCTTGTACTGGTTTAACGTAACATTTCCGAATTGACCGTAAAAAAGGGCAACCTTTAGCTTTCGTGTGTTTGTGCGTTTGTAGTACGAGGGTTAGAGATTCTTATATACACTACAGtttatggccagaagtatgtgaacacctgaccattacacctaAATGTGTTTCcgtcctcaaactgttgccacaaacttggaagcacacagttgtataaaatgtctttgcatgc

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90968 lncRNA downstream 4917 3786956 ~ 3805597 (-) False faima
TU90910 lncRNA downstream 215103 3592818 ~ 3595411 (-) True G76570
TU90786 lncRNA downstream 843981 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA downstream 843981 2965395 ~ 2966533 (-) False G76462
TU90778 lncRNA downstream 873951 2936081 ~ 2936563 (-) True G76455
TU91019 lncRNA upstream 35337 3851396 ~ 3852207 (-) True G76658
TU91051 lncRNA upstream 121735 3937794 ~ 3938000 (-) True G76682
TU91057 lncRNA upstream 151814 3967873 ~ 3968077 (-) True G76688
TU91180 lncRNA upstream 189635 4005694 ~ 4005908 (-) True G76794
TU91182 lncRNA upstream 191378 4007437 ~ 4007795 (-) True G76796
XM_026934130.2 mRNA downstream 26121 3770234 ~ 3784393 (-) False parp14rs1
XM_026934120.2 mRNA downstream 26121 3770234 ~ 3784393 (-) True parp14rs1
XM_026934140.2 mRNA downstream 26121 3772777 ~ 3784393 (-) False parp14rs1
XM_034304801.1 mRNA downstream 65132 3634589 ~ 3745382 (-) False dnah7
XM_034304802.1 mRNA downstream 65134 3633992 ~ 3745380 (-) True dnah7
XM_026936728.2 mRNA upstream 76421 3892480 ~ 3923274 (-) True gypc
XM_026936716.2 mRNA upstream 187667 4003726 ~ 4126493 (-) False cntnap5a
XM_026936707.2 mRNA upstream 187667 4003726 ~ 4126493 (-) True cntnap5a
XM_026910834.2 mRNA upstream 474013 4290072 ~ 4294136 (-) True sfrp2
XM_034304750.1 mRNA upstream 516836 4332895 ~ 4333842 (-) True LOC113535176
trnas-cga other downstream 871112 2939321 ~ 2939402 (-) True trnas-cga
XR_004578243.1 other downstream 1004651 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other downstream 1004651 2804548 ~ 2805863 (-) False LOC113541352
TU90190 other downstream 1761129 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 2006869 1797982 ~ 1803645 (-) True G75893
TU91765 other upstream 1023901 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 1515525 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 2507094 6323153 ~ 6324680 (-) False LOC117597343
TU92645 other upstream 2712987 6529046 ~ 6564571 (-) False G78058
TU92652 other upstream 2712987 6529046 ~ 6565037 (-) False G78058

Expression Profile