RNA id: XM_034304265.1


Basic Information

Item Value
RNA id XM_034304265.1
length 3346
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC113524317
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 322246 ~ 354605 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATTTTGTGAAGAGTCGAACAGAAAGAAGTCGAGGAGAAACATACGATTTAAGGCTGTACTCTGACGGAGGAGACATGATCTCTACAACGAGGTTGTCTGGCATACAGGACACGAGGACAATCAAGAGTCTGATTCAGGGTGAAagatcagactcacctgaacccagctgtgtgtccatgatgAGTGACAGATCAATGACTTGTCCAGTAAAAGTGCGAGATTCTTCTGATGATCTGAGTCTGATTCAGGGTAAAagatcagactcacctgaacccagctgtgtgtctaTGAAGAGTGACAGATCAATGACTTGTCCAGTAAAAGTGCAAGATTCTTCTGATGATCTGAGCTGTGTGTCAATGAAGAGTGCCTGGTCAATGCACCTTCCAGTGATCTTCAGACAGGAAGACTCTTCTACTGATCTTGGAACCAAAAAGGAGACTAAGACATCCAAAAACATCTGCCTAAACACTTTGGAGTCCAtatttaagGAGCTGGAGCATAAAGCCATCACTCTGTTAAAAAATGAGTTGAAGAAGTTCAAGAAGCTGCttagtccagattacccagcatgctctgaAATGGACATGGAGGACAAGGAGGATCTTAGCTGTGTGAGAGACGGAGCACTGAAGATAACACTGCACATCCTGAACAACATGGCCCAGCCAGACCTCGCTGTTACACTGCAAACCCGGATTATTTATGCAAGgcataaaaaacacaaatccaaaCTGATAGAgaaatttaaaagaattaatgaaggaatctcacagtaTGGAAGCTTGACCCTGTTGAacgagatctacacagagctttACATCACAGAGGATTGGAGTGGAGACATcagtaatgaacatgaggtgagacagattgaggcagcatccaggagaccagcaacacaggagaaacccatcaaatgtaatgacctctttaaagacaagtccatcagaactgtgctaactaaaggagttgctggaattggaaaaacagtctctgtgcacaagttcattctggactgggctgaaggaaaagcaaatcaggacgtcttCTTCATGTTTCCTCTTCCCTTTAGGGAGCTGAATTTGGTGAATCAGGAAAATCTCAGTCTGCTAAATCTTCTTTACTACTTTTTTCCAGAAACTAAAAATTTAATAGACATTAATAACCACAAACTCCTGttcatctttgatggtctggatgagtgtcgacttcctctaaatttccagaacaataagagattgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacgaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagccagtcagatccctcctgagtgtgtagaccaggtaacagaggtacgggggttcagtgatcctcagaaagaggagtacttcaggaagaggatcagcgatcagagcctggccaataacATCATCAGACAAATGAAGAcatcaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgttcacacacttcctgatctttcagatcaaacgcAAGGatcaaaagtaccatcagaaatgtgaccctgatcctcagcagaccagagagagtatcctggcactgggaaaactggctttccaacagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcatcgATGTCAGAGAAGCgacagtgtactcaggagtgtgtacccaagtcttcagagaggagtttgggcttcacctggggaaggtgttcagctttgtacatctgagtgttcaggagtttctagCTGCTTTATACTCATTTCTCACCTTTGTCAACAAAAATGTAACAAGACAACCAAgcactgatctgtctgatcttttaaacacatcaaacatgtctgatttcctcaggagtgcagtggacaaggccttacagagtgagaatggacacctgaacctgttcctccgcttccttctgggtctctcactggagtccaatcagactctcttacaaggtttaatgccacagacaggaagcagctctcacagcaaacaggaaacagtcgagtacatcaaggagaagatcagggagaatccatctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgaccAGACTCTAGTGCAGGAAGCTCAGGTGTACTTGAACAGAAAAGGTTACAGTCGTCTCAGTGGTGCTTGGCTTTCACATgatcagtggtcagctctggtgtttgtgttgctgaactcagaaGAGGAACTGGATGTATTTGATTTAAGGAACTATTACagatcagaggaatgtcttctgaggctgctgccagtggtcaaagcatcCACAAAAGCTCTGCTGTGTGGTTGTAATCTCACAGAAGAAATCTGTCCAGCTCTGTCCCTAATTCTCAGCTCCACGTCTTCCAGCCTGAGGGAGCTGGATTTGAGTttcaataacctgcaggattcaggagcaTGGCTGCTCTCTACTGCTCTGGaaaatccacactgtaaactggaggcACTGCGGCTGGAAAAGTGCGGCATTACAGTGAAAGGCTGTGATtatctggcttcagctctgacgTCAAACCGCTCCTCACACCTCAGAGAGCTGAATCTGAATAATAACGAACCTGGAGAATTAGCGGTGAAGATGCTCTGTGATCTACAGGAGGATCCACAGTGCAAACTAGAGATACTGTACATCGAGAGAGACCCCCTGGAGTTGCAGAAAAGTCACTCTTCACACTCTTCCACTGAGCAGTTCTTTATCACCAATACAGACTCACCAGAGTTCTCCCTTTCAAGACGCCGTCGTACTTTTCGACCAGTGTGAAATAGCCAGAACGTCAACCTGCTGAATTTCGGATAACGAAAATGACAACGGCTGatcaaatttatttgtttaatcttgctagaagaaaagaaaaaatcaaatCCTTTCCCATCTATACACAGCAGAGACATCATCATAGAGAATTACTATACGCAAGACAACAGCTGTTTCTAGCAATGATGAAGCTGATAATGAAAGCTGCTCAGTGAGAGTAAATGTTACTTGGTGCaatttttagtaatttatttgtttcttggCCGATGTACAGATCTGATGTCGATTTCGCGCTTACATCATTCCGCCTCAAAAAATCCTCAAATCCTACCTCACTGGTCTTGAAGTGAAGAATTTCAACTTGCTTATGTTGCTGTCATGATGATGAAATCCTCCCCAGCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578168.1 lncRNA downstream 236325 83870 ~ 85921 (-) False LOC117597330
TU88992 lncRNA downstream 236360 84571 ~ 85886 (-) True LOC117597330
TU88997 lncRNA downstream 258958 62798 ~ 63288 (-) True G75037
TU88745 lncRNA downstream 276377 44484 ~ 45869 (-) True G74827
TU88739 lncRNA downstream 286803 35050 ~ 35443 (-) True G74822
TU89138 lncRNA upstream 18008 372610 ~ 374644 (-) False LOC113524348
TU89152 lncRNA upstream 62135 416737 ~ 417747 (-) True G75183
TU89173 lncRNA upstream 76917 431519 ~ 434836 (-) True G75195
TU89179 lncRNA upstream 126466 481068 ~ 481964 (-) True G75201
TU89228 lncRNA upstream 206751 561353 ~ 561963 (-) True G75240
XM_034304279.1 mRNA downstream 64800 232575 ~ 257446 (-) True edar
XM_034304299.1 mRNA downstream 121234 196637 ~ 201012 (-) False nms
XM_034304260.1 mRNA downstream 147887 164750 ~ 174359 (-) True LOC113524366
XM_034304300.1 mRNA downstream 165967 136834 ~ 156279 (-) True LOC113524367
XM_034304295.1 mRNA downstream 180953 138938 ~ 141293 (-) True LOC117597326
XM_026910564.2 mRNA upstream 17965 372567 ~ 374622 (-) True LOC113524348
XM_026910563.2 mRNA upstream 57971 412573 ~ 416058 (-) False trappc2
XM_026910562.2 mRNA upstream 57971 412573 ~ 416022 (-) True trappc2
XM_026910557.2 mRNA upstream 78685 433287 ~ 458683 (-) False gpm6bb
XM_026910558.2 mRNA upstream 80792 435394 ~ 458683 (-) True gpm6bb
TU88975 other downstream 121528 195031 ~ 200718 (-) False nms
TU88976 other downstream 121921 195031 ~ 200325 (-) True nms
TU89040 other downstream 159669 162214 ~ 162577 (-) True G75076
TU88741 other downstream 277900 43731 ~ 44346 (-) True G74824
TU88709 other downstream 290207 18934 ~ 32039 (-) True G74815
XR_004578164.1 other upstream 503802 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 507426 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 583410 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 790695 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 817279 1171881 ~ 1187499 (-) False lcp1

Expression Profile