RNA id: XM_026910517.2


Basic Information

Item Value
RNA id XM_026910517.2
length 6053
RNA type mRNA
GC content 0.45
exon number 9
gene id fancb
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 490480 ~ 501207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGGCGGGAATTGTTTACTGACAGAAATGAAGCACAAACTCTCACTCAGGTCACTCAGGTGTTAGTGGTGTGTAACACCAGTGTTATTTTTCAGGTATTTTCAGGTATTTTCAGGTACTTTCAGtaaacgTCTTGACATGAGCAGTTTTCATCGAGACTGAAGGGAGCGACTGTGGAAATTCTTCAAACTTCTGTCATGAGTGTTAAACCTTCTGAAATTCCTGTCACAAAATCCACAACTCTTCAAAAAAAGTCCTTTCAGATTTCTCGCTGGAGCTCTACACCGCTCAAAACTGATGTCTCGCGTGTCGAAATCTCTGTCACGACTTCTGTTCCAGCTCCCGTTATCCGCAAAAAAACAAGCCGATTTGTCGCTTGtggggggcgtggcctgtctaaaattgtttttcttccccATATAGTAGTAGTAGATTTATATAGCCTCTAAAGCGAACTACGCAAATGAAAAAATGCGCTAATCAGTGCGAAAGTTAGTTTAATTTGTTGCTTCACttcattctcagattagattagcaaagcgagctaactgtactagctgcTTACACTCACCAGATTTACcagcgatctctgctacttccttccaagtgttatttttcttcctgacgtctctatacacatttaatgagagttCATATATATGTCAGGATAAGAAGAAACTATGGTTCATTTTTGGGCGTCAACAAGTTTGGATTTGTCTCTTTACAATGTCATAGCCACTTTGTGAACCTTGGGTTAATCTCCTTCATAAGTTGTTCTTGTGAAATTTAGCaatttctgtctcttttgcaTTTCTGCCAAACCTGTCGCAACTGTTGTAACTTCAGTCTCATCTAGCCCAGCTTCTATCACAACCCACTTGTGAATGTCGTATCTCCTCTGGCACGTATTACTGCTGTTGTTTCATCCGTCTGTCACTGTCTGATCATAAATTCTGTCAGAACTAGAACTGCTTTTAactagaaaagcatctcagacctTCAGAACTCTTTGAGCTTTTTCTGTGTAAAGTAAGATGGCCTCAGATCAGCGCATCCATATGGTCACACTGCATGGTGACCTAGTCATCTTTCAGTGCAAGCATCCAAGCTCAAAAGGCTCCGAGATCACATTCTGGCGGATGTCGTTCAATCGAGACTCGGGCACCTTCTTAAACAAAGACGATAAAATAATCCCCATGTACGAAAATGCCTCCAGAGCAGCCAGGATCGTTCGTTGCACCACTGCCGTGAACGTGAAAACGAGGCAGAGAGTCTTGTGCATTCTGCTGAGGCTTCACAGGAAGAGATCTCAAGGGTTTAAGTACATGCTTTACTCTTTGAACAGTAGGACCAGTGCAAAGCTACACGTGGAATTTTCATTGCCTTACGAGATGGGCAACGACATCTCGATTTTGCGTGGACCCACTTTGGTCTGGAGTCATGAGGACATTGTCTTCTACACGTCTGCAGAAACTGGTAGCGTGAAGGAAGTCCCGATACGTCTGAAGGTCAGCTTTCTTGGCGAATTGCCCCTTCCTCAAAGACAATTAGCAATTCTTGGTTCACAAAAGATGACAGAAGAAGAGGAGGTGGGAAATGATACGGAAGATAAAACTGTTCTTTACTTCCTAGAGGATGGAAGAACTTTTAGCTCTGATCTTCTTTTACCCAGTGCCTACAGTTTGGTTGTTCGATGTATGCTGGTGCTTTCAGCCAAGCAAGTAGATGGATTGCTGAGATCTACTGTGGTGGCTGCCACTTGTAGGAAACAGCTGGTGCGGTTTGAAAACGGACTTCCAGAAGAAGTGTGTCTTCTCCCGTACGAAGAGCCTCAAAGCATCCGAACAGTTCATGTAGGAAGCGGCTGTCTCATCGTTATCGTTTTCGAGCGTGGGAACGTCTGTGCTGTGTGGAAAGATACCTTCAAGGTGGCTGCTTGCTGGACAGACGTGCGCCTTGTGCTTGTAGATGATTTTGTTGGTGCGGGGTTTGAGCAGATTTTGCTGATTTTCGAGGAAATCGACTCGGCAGACGAAATCCTGGGAAAATTCCTCCTCACGGACCTCTGTGGCGTCCATTACTCCCTTGGAAGAGCGGAGAGTGAAGATGTTAACCGGTGCGAGACGGCAGAAGAAAATATAACGCTGACGATTCAAGCTCTAGAAGCCAGACTGCAGagcGGTTTGACCTTCCTCCAGGACCTCCGGAGAGACCTGCGTGTTAAAGATCACGTCATCCAGCAGTGTGTATCGGCTCTCCGCGACCTTTTATCAGACAGGAAGCACGTTGCATCTCCTGCGCTGCAGGAGGGACTGGTGTCTCTGTTGGATGAACAGAGCGAGGAGGACGAGTGCGCTCCACGTGTAAGGATGATGGAAACGAATTCGGGCGAGAGTCTTCCGAGCGTGGAGAGAGTCTGGCACAGAGTCATCGGCCAAAGGCTTGTGTTTGGCGCACTTTTAGCGCCGACCAATCAAATGACGGAATCAGATCACATGATCGCTGCTGTCATAGCCACGCCCCCTGTGGTTGAAAGTGTCAATAAAATCATTTGCTACCCTGAACCCCTGACCTCTGTGCCCCCTGGACCTCCAAATGCTAAAAGAAGCAAGCTTCCTAGTGGTCCAGCCATACTTATCGTCACTGATCTTGCACCGTtattgacctttgaccccattAAATGCTCTGTTCTGCTGTGCTTTTCTACCAAGGAAGCAGGAAGTGCATCTCGGCATTGCGAATTAgtaaatttagatttaaaggGTGCACTAGAGGGCAAATTTCAGCCGCGTCTCTTCGAGGACTGCAGCATTGACTCAGATGAATCCAGAGAGGATCTGCTGAGTCTGACGGTTGCGCTCGAGTCTTGGTGTTTTCGCATCGTAAGTACTGATCGCACCGTGGTGGACGTATCAAGGTTTTTGGAGGACGAGTTCAGAGCTAAACGAATAAAAATCAAGCCGCAATATTTGCTGAGTCGCTCCACACATGCGTCCGGCGCTATGCTTTTCCACTGGAAACCCTGCAGCTCCTTCGAAGGAATGCTGGACGTCTATTGCAGCGATCATCTCAGCTTGCTTCGTTTCCTGGACTCTTTGTGCAActtccttcctgtttctcaTTGTGTTAAACTTCTCAAAACTGGGCAGGGCAGGAACAGAAGCCCCGCTCTCTTTATGGAGCACGAGATTCGCGCGGTAAAAGAAGGCGTGGCTGATCTGATCCATGGCCGAGCGGAAGAACCGAGCAGCGATCTCATCATTCATATCAGTCGGGAGCAGTGGCTAAAAGAAAGGAGTGATCAGCTCCGCCCGCTTGTGGACGTAAAGCTTTATCACCGGATGGTGGAAAGAGCGATGGACGTCAAGATGGCGAGTGACGTTGCCACGCTCATGGAGGCGGAGCTTAACGAGTATTGATGAagttaaaatgtgtgtagtgcagcaggtcgTGCAACAGTTACAGCATTGATGGGCATCACACCAGCGTGAAGCTCATTAcgtttaaatattatattatggcATTACTAAATGTGATTATGGACAAACATGTTGTACTCCATTCTAGTAAAAATGATGTGACTTTGCATTTAGTACCAAAACCTAGAACCCTAGGTTCCTGTCTAAGGTCATGCCACCCAAGTTTGTGAACTAAGTGATTAACCTTGAAGTGTTCTGCGAATGAACTTGCAGAACACAACCTTCGGTGTTCAGTACATGCCTTACGGTATTATTTAAACTGCACAGCTGCTATTAGTTCCACCAGATTTTCAGTTGTTGTGGTGCAAATGCACAGGTTGCTCCCCTGTCTAAGCAATGACTGGACACTATACGctggggaagtggtagctcagtggttaagacgttggacttctgattggaaggttgaaaGTTCAAATCCcggcaccaccaagctgccacttctgggcccctgagcaaggcccttaaccctcaactgctcagttgtataaatgagagaATTTATATTAGTTCCGCCAGATTTTCAGTTGTTGTGGTGCAAAGGCACGGGTTGCTCCCCTGTCTAAGCAATGACTGGACACTATACACAGGGGAAGTGGAAGCTCACCCAATTATATACAGttgggtgtctgccaaatgccgcaAATGTACAGGCTGGACACTCAGCCGATTCAATGACGTGCCATTCCAAAAGCAGGGTCTAATCCTCATGAGCACTACTGAGCGGTGTTCAGCTGTAGGTTACCTGCACGGCAGCTACCTGGGTATCACCGTGTACGTTCTTCTTACCCTAGAAGGTCAACATCACCCCCCTGATGGTGTGAGGCTGGCAAGTTCCTCATGAGTGAGTTGGTTCCTCGTGATCATGTGGCACGGGGTATCCAGTCATTAAATACTGCCCCGGGTAGAAGGGGTGAAATAGAGAGGTAGTTGCAAGGGTTTCCTGTCTCTCAGAGCTGCCTCCACAGCAAGTACTTGGCTAGGTTCCCGGGGACTCCAGAAAATGTCAGTTACATTTGTAATTAGCCTTTTGGCTCATCCACATTGTCCCTATTCAAAGGTTTCAGACACAGCTTTTGATTTCGACTTTGTCCTCGCACAATCCGGCATGCTTCTCAACTATTCCAAGGCATATCTCCCATAACAtagttattatacagtataaacctTTTGCCTATGTTCTAGTTTGCTGTGTAGTTTCTGGGATTCAGTTGCCTGCCCTTTGGTGTGTAGAGTCTGCATTTCCCTGCATTCAGCATCTGATCTGGTTACTGTGGATGATTCTGGTAaaacctttaataaataaatgccatgTGGATCCGCCTCGTTGCCCGGAGTCACCCTGGCTAAAGTGTCGGTGAGGAAAGGCTCAAATCTGGGAACGGTTCATCACTGCACACGGAGAATGTGTTCGTTTGGCATTGAATGGCCTGGACAATGACACATCaaagacacatttattttttactactTTATTTTGAATGTTGTTTCAAGTACAAACAATCCATATTCATTAACATATGCAGTCGAAGAAATGCTCAGAAAGTGAGGAAATAGAAACGTACACCAATGAGCATGTGATGACTAAGGCCTAACGGTTTAAGCTTCACACACTCCAAGGACCTGGCGACTGTGTAGGAATTGCGACTGAATTCtgtacaaacttttgtccaAAGACAGTTTTAGAAAAACTGGATCGTCGTCCTTTCATATTAAATCTCATAAAAACCAGTAGAATACTTACATATTTTTGAGGTTCATACAAATATTCTGGCAGTGGATTAACTTCAAATTTGGCCTGTAACTTGGCTGCCCAGTAGTATTTGGACAGTTTTGATTTGTCTCCAAATTTCAAGGGTATTCACGTCTATATTAGGTGaacaattttatacattttgggGAACCAAACGCAGCTGGACAGTTCTTGCCCATTGGTGTGTCTTTGGATCACTAGTTCAGGAACAAGATAGGAAATAAACAGTGTTAAAATGAGTTAATTCTAGATGTCACATTAATATCCCTTAAAGGTGTCCGTGCCACAAATCAGACCATAATCTAGAGTTTAAAATCCAGAATAAATCCACCGGAGATGAAAAATTAGATGTGTTAGAATCACTGATGCCTAAAAGAAATCCTTGGTGTCCTGAACTTTGATGACTTTGATGCAAGCTTCACAGAATGACCTGTAAAGGTAAGATATGCGTCATCTTTCCAGATGGATACATGCGcagtccataaaaaaaaattactgtcgTGACGGATTAGGGcgggactaaaatcccagagatattCCAGCAATAATAACGTTACCTCACCTTACtgcatgtaaaactaatcctgtCCAGATGTATCTTTGACCGTTTTCAACATTTTGTGCTTTTGCCATGTGCTAAAATGACGTCAGCGTTGTGCTGACTGCAGCAATTCTAGTATTTTATGGAATGGTTACGGTTCCTGTCGTATAGATGCAGGAATTTATCCATCCAAAGGTTCCAGAACCTCAGTGGAAACTGTTTACGGCACACTGGTCATTCTAGGACAAATTTGCAAGTGTTAGCAAAACATACCGAATT

Function

GO: NA

KEGG:

id description
K10889 FANCB; fanconi anemia group B protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89179 lncRNA downstream 8516 481068 ~ 481964 (-) True G75201
TU89173 lncRNA downstream 55644 431519 ~ 434836 (-) True G75195
TU89152 lncRNA downstream 72733 416737 ~ 417747 (-) True G75183
TU89138 lncRNA downstream 115836 372610 ~ 374644 (-) False LOC113524348
TU88996 lncRNA downstream 159990 329943 ~ 330490 (-) False LOC113524562
TU89228 lncRNA upstream 60153 561353 ~ 561963 (-) True G75240
TU89341 lncRNA upstream 129244 630444 ~ 701572 (-) True G75332
XR_004578166.1 lncRNA upstream 151953 653153 ~ 660719 (-) True LOC117597328
XR_004578165.1 lncRNA upstream 159706 660906 ~ 662091 (-) True LOC113524353
TU89360 lncRNA upstream 189880 691080 ~ 719042 (-) False tmsb4x
XM_026910557.2 mRNA downstream 31797 433287 ~ 458683 (-) False gpm6bb
XM_026910558.2 mRNA downstream 31797 435394 ~ 458683 (-) True gpm6bb
XM_026910563.2 mRNA downstream 74422 412573 ~ 416058 (-) False trappc2
XM_026910562.2 mRNA downstream 74458 412573 ~ 416022 (-) True trappc2
XM_026910564.2 mRNA downstream 115858 372567 ~ 374622 (-) True LOC113524348
XM_034304668.1 mRNA upstream 174319 675519 ~ 685478 (-) True arsh
XM_026910567.2 mRNA upstream 216210 717410 ~ 719115 (-) False tmsb4x
XM_034304669.1 mRNA upstream 219427 720627 ~ 724412 (-) True LOC113524316
XM_026910510.2 mRNA upstream 224311 725511 ~ 729048 (-) True tlr7
XM_034304257.1 mRNA upstream 228392 729592 ~ 765991 (-) False frmpd4
TU88975 other downstream 289762 195031 ~ 200718 (-) False nms
TU88976 other downstream 290155 195031 ~ 200325 (-) True nms
TU89040 other downstream 327903 162214 ~ 162577 (-) True G75076
TU88741 other downstream 446134 43731 ~ 44346 (-) True G74824
TU88709 other downstream 458441 18934 ~ 32039 (-) True G74815
XR_004578164.1 other upstream 357204 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 360828 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 436812 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 644097 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 670681 1171881 ~ 1187499 (-) False lcp1

Expression Profile