RNA id: XM_026910528.2


Basic Information

Item Value
RNA id XM_026910528.2
length 2864
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC113524324
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 944319 ~ 957738 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAACGCGCCCAGTAGCTGCTTCTCCAACCTCCAGAAAACTCAGAAGAAGGAAAAGACGCTGCAGGTTTTTCGCTTGAGCAGCTGAGTTTATGCGGCCGAGCTGATCATTTCTACATTAAATCGTTTCTGACAGAGGTTTAGGTTTGATCCAGCTCGAAATAAAAGCtcgtcattgtgtgtgtgtttgaggattTAAAACCCTGAGACCTGCTATAATGAGTTCAGCAGGAGACAGACAGCGCTCCTACAGAGAGTCTCAGGCTCCTGATCCTGCTCCTGCTCCCTCACAGCTGTGTGAGGACGTGAAAACGGAGACTTCAAGTAGAGGGACAGAGGTCTGTGTGAAGAAGGAGGAGACGCTGGAGCCGAACATATACAGCCATGGAGAAGATTTCGACAACACGCCTGAAGTTATCTCCATTAAAGAGGAAGAAGCTGACAGTGAAGACTACCTCTACTGTGAGGTTTGCAAATCTTACTTCTTCAACAAGTGTGAGGTTCATGGTCCGGCACTCTTCATCCCTGATACTCCTGTTCCCATGGGGATCGCTGACCGAGCCAGACAAACTGTTCCTCCTGGATTAGAGATTCGGAAGTCCGGTATTCCTGACGCAGGCCTGGGAGTGTTTAATAAGGGGGAGACTGTTCCTGTAGGCGCACACTTCGGACCCTACCAGGGAGAGCTGGTAGACAGAGAGGAAGCCATGAACAGTGGTTACTCCTGGGTGatataCAGAAGTGGGCAGTGTGAAGAATACATAGATGCCAAGAGAGAGATGCATGCTAACTGGATGCGGTATGTGAATTGTGCCCGTAATGAAGAAGAACAGAATCTCGTGGCCTTTAATTTTCGAGGGGGGATTCTGTACCGTTGCTGTCGACCCATCAACCCAGGACAGGAGCTCTTGGTGTGGTATGAAGAGGAGTATGCCAAAGATCTTGGCCATACGTTTGACTGCCTCTGGAACAAAAAGTGCTCTGCAAATGAAGTGAACAAAGCTCCGTTTCAACTTTTCTCCTGCTCATTGTGTCCACTTTATTATAAGTCCCAAATTTACCTCAACAAACACATCCAGCGCTACCACTGTGAAGATGTGAGACAGCAGAAATCAGGAGAGAGTCAGCTGCCAACAAACAGCTCCAGTAATCAGCAGACATCTGGTACCTTTAGTTCCAACACCTCtcagaaagaaatagagaagaAAATTCATATTTGCTCAGAAAGTGGAAACAGTTTTACTCATCAGAGTGCCCTCAAAACATATCAGTGCAGTCAAACAGGAGAGATGCTGTATCACTGCTTACAGTGTGGCaagagttttaataaaaagagtAATCTCCGaaaacaccagcgcattcacacaggagagaagccgtatcattGCTCACAATGtgaaaagagttttattcaAAAAAGTGATCTCCGgcaacaccagcgcattcacacaggagagaagccgtatcactgctcacagtgtgggaagagttttactcatCAGAGTCATCTCCAACTacatcagcgcattcacacaggggagaagccgtatcactgctcagagtgtggAAAGCGTTTCAATCAAAAGAGTAACCTCCATGTccatcagcgcattcacacaggggagaagccgtatcactgcttacagtgtggaaagagttttactcTACAGAGTCACCTCCATGTccatcagcgcattcacacaggagagaagccgtatcactgctcacagtgtgggaagagcttTACTCATCAGAGTCATCTCCAGCGACATCAGCGCactcacacaggagagaagccgtatcactgctcacagtgtgggaagagttttaatcatCAGAGTCATCTCCAACGACATCAGCGCactcacacaggagagaagccgtatcactgctcacagtgtgggaagagtttctCTCAACAAAGTACTCTTCAActacaccagcgcattcacacaggagagaagccatatcacTGCTTACAGTGTGGAAAGAGGTTTACTTATTCACTTACATTTAAGACCCATAAGTGCACTAACACAGAGCCATTGCATTATTTGAATTATGTATCAAATTAAATATGACTATCTCTACTTTTTTGACTTAAAATGATCTGTGTTAactgtatttttgcattttatttatcttgaCTTTCTGTGGAAGGCAAAGTATATCATGTTATTCCAGTGATTCATATTCTTATTTTAATGTTTGCTTTTGACTTTAAATAGCCTTAACAAAAGATTCataaattctgtgtaaactctagagactgttctgtgggaaattcccaggagatcagcagtttctgaaatactcaaaccaaccaaTCTGGGACCAACAACCATGATGATGATGCTCATGACCTGTatctttataatttttttgcattgtgctgctaccacatgattggctgagtaGATAACTGCGTGGATGTACAGTTGTAGAgatgttcttaataaagtggatggtgaatgtaGCTTGCTAACCTTGTAAATGGATATAACTGTGTGCCCACTGTGCAACAGTTGAAGTCAATACTGTGCTGGATTTACATTGTAAGATTACACTAGCTCTACTAACTGTACACTCAACTGTATGCATATAAACAGGGTTTTGCATAGAAAATATCTCAACATTTATTGAACAGTGCACTCTTCGCCTGTCTCAAATGCACAGCATCTGCATGTGATAATTGGGAGATAAAAGGGGTAAAACCATGTAACCAACTCTTGGAGTTGCTTGGAGTTGCAATGCTGGTTACCTGAGTAGCCTAATACAAATCCATTTTCCACATTGGTATAtcttattattttctctttgtaagttgtaaatattgtaaataaatgaagtatAAAGTTTTGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89459 lncRNA downstream 14962 929147 ~ 929357 (-) True G75428
TU89460 lncRNA downstream 15353 927859 ~ 928966 (-) True G75429
TU89458 lncRNA downstream 18225 919896 ~ 926094 (-) True LOC113524338
TU89366 lncRNA downstream 52262 796822 ~ 892057 (-) True G75348
TU89394 lncRNA downstream 171889 767361 ~ 772430 (-) True G75372
TU89682 lncRNA upstream 122185 1079923 ~ 1080355 (-) True G75599
TU89683 lncRNA upstream 123469 1081207 ~ 1081406 (-) True G75600
TU89714 lncRNA upstream 177888 1135626 ~ 1140203 (-) True G75628
TU89729 lncRNA upstream 211721 1169459 ~ 1169693 (-) True G75640
TU89722 lncRNA upstream 251647 1209385 ~ 1215704 (-) True G75636
XM_034304281.1 mRNA downstream 7351 920836 ~ 936968 (-) False LOC113524338
XM_026910548.2 mRNA downstream 7351 920836 ~ 936968 (-) False LOC113524338
XM_026910560.2 mRNA downstream 79712 860997 ~ 864607 (-) True sox21b
XM_026910542.2 mRNA downstream 110427 827281 ~ 833892 (-) True dct
XM_034304254.1 mRNA downstream 186398 729592 ~ 757921 (-) False frmpd4
XM_026910536.2 mRNA upstream 145302 1103040 ~ 1112551 (-) True LOC113524329
XM_034304297.1 mRNA upstream 197381 1155119 ~ 1159338 (-) False rpl31
XM_034304298.1 mRNA upstream 197381 1155119 ~ 1159197 (-) False rpl31
XM_026911023.2 mRNA upstream 212971 1170709 ~ 1187499 (-) True lcp1
XM_034304768.1 mRNA upstream 313669 1271407 ~ 1282002 (-) True ints6
XR_003402538.2 other downstream 6116 938012 ~ 938203 (-) True LOC113524372
XR_004578164.1 other downstream 79712 858404 ~ 864607 (-) False sox21b
TU89432 other downstream 79825 862028 ~ 864494 (-) False sox21b
TU88975 other downstream 743601 195031 ~ 200718 (-) False nms
TU88976 other downstream 743994 195031 ~ 200325 (-) True nms
TU89684 other upstream 187559 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 214143 1171881 ~ 1187499 (-) False lcp1
trnas-uga_4 other upstream 272571 1230309 ~ 1230390 (-) True trnas-uga_4
trnal-cag_10 other upstream 272849 1230587 ~ 1230669 (-) True trnal-cag_10
trnaw-cca other upstream 295185 1252923 ~ 1252994 (-) True trnaw-cca

Expression Profile