RNA id: XM_026910531.2


Basic Information

Item Value
RNA id XM_026910531.2
length 2673
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC113524326
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 96182 ~ 106080 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTATAATGAGTTCAGCAGGAGACAGACAGCGCTCCTCCAGGAAGTCTCGGGCTCCTGATCCTGCTCCCTCACAGCTGTGTGAGGATGTGAAAACAGAGACTTCAGATGGAGGAACATTCGACGTGTCAGAAGTGAAGAAAGAGGAGACGCTGGAGCTGAACATCTACAACCATGGAGACGACGCTGACAACACACCTGAAGTTATCTCCATTAAAGAGGAAAATCCTGACAATAAAGACTACCTCTtgTGAGGTTCACGGACTGCCTCTCTTCATCCCTGATACTCCTGTTCCCATGGGAGTCCCTGACCGAGCCAGACAAACTCTTCCTCCTGGACTAGAGATTCGGAAGTCCGGTATTCCTGACGCAGGCCTGGGAGTGTTTAATAAGGGGGAGACTGTTCCAGTAGGCGCACACTTCGGACCCTACCAGGGAGAGCTGGTAGACAGAGAGGAAGCCATGAACAGTGGATACTCTTGGGTGGTCTACAGGAGCGGGCAGTGTGAAGAATACATAGATGCCAAGAAAGAGATGCATGCGAATTGGATGAGGTATGTGAATTGTGCTCGTAATGATGAAGAGCAGAATCTTGTGGCTTTTCAGTATCGAGGGAGCATTCTGTATCGCTGCTGTCGACCCATTAACCCAGGACAGGAGCTCATGGTGTGGTATGAAGAGGAGTACGCTAAAGATCTCTGCCCTGCATTTGATTGCCTCTGGAACAAAAAGTGCTCTGCAGATGAAGACAATGCCCTGTTGCAAGTCTTCGCCTGCTGCTTGTGTCCACTGTCCTATACATCTCAAACTTACCTCCACAAACACATCTGGCGATGCCACTATGAAGAATACGTGAGACTTCAGGAATCAGGGGAGATTAAATATGAGATTCTGATTCCCACAAAAGGCTTCAGTCGTCAGCAAACATCATCTGGTACTCTCCATTCTGACACTTCTCACAATGATATACAGAAAGAAATTCATCACTGCTCAGACAGTGAAAAGAGTTTTACTCTTCAAGAACATCAGCGCATTCACAAaggagagaagccatatcacTGTTCTCAGTGTGATAAAAGTTTTACTGACCAAAGTAATCTCCGAAAacatcagcgcattcacactggagagaagccatatcactgctcacagtgtggaaaacGTTTTACTCAACAGGGTAATCTCCGCAAACATGAGCGTGTTCACACAGAAAAGAAGCCATAtcactgctcagagtgtggCAAGAGTTTCCATCAACAGACTACTCTCCAGCtgcaccagcgcattcacagaggagagaggtcgtatcactgctcacagtgtgggaagagttttaatcagCAGAGTCATCTCCAAGTCCAtgagcgcattcacacaggagagaagccgtataaCTGCACACAGTGTGGCAAGAGTTTCAATCAGCAGAGTGATCTTCAACGACAcaagcgcattcacacaggagagaagccatatcactgctcacagtgtggcaAGAGTTTCACTCAACAGAGTAATCTCCAAAAACATCAGCGTGTtcatacaggagagaagccttatcactgctcacagtgtgggaagagttttactcatCAGAACAATCTTCAaaaacaccagcgcattcacacaggagagaagccgtatcattGCTTACAGTGCGGAAAGAGTTTTACTCAACAGAATCATCTCCAActacaccagcgcattcacactggagagaagccTTATCACTGCTcccagtgtgggaagagttttagtCATCAAAGTACACTACAACGACACCAACGccttcacacaggagagaagccgtatcactgcttaAAGTGTGGGAAGAGATTTAATCAACAGAGTGATCTCCAACGACACGAGCGCATTTACACAGGAGAGAGGCCGTATCACTGCTCCCAGTGTGGGAAGAATTTTAATTAttctatttcatttaaaacccaTAAGTGCACTAACGCAGAGCCATAACATGATTTgaatttgtaaaattaaatatgattttatctTTACGGTTTGGGCTTAAATTATATGTTTaagtaatatttttgtattttatttatcctGACTTTCTATGAAATGTTACTgtaatgattaatatttttactttaatgtttgtttttgatcATAACATATTTTACAGCATAAAATTCGTAATGTCTGTGTAGGTGACTTAAGTGCAACACTATTGTTAGTGTAGTAACTACTACAGCATAAGACTAAAGCAGGGCTGGTTGAGAGCACATCCTGAAAGGAAGAATGGAAACAGTACCAACATCTCACCATCTTCAGCGAAACTCTTTATGCCAATGATCCCTTTCTTCTGCCCATTTGCATTAGAGGAAATCAGCTGTATGCTTTTTGGCAAGGCCTGGTTTATATTACTGCATTATAGTGTATTTGTGTCACAAGGCAGAGAAAGGGGTTTATGGGTAAGCATTGCATGCAGAGATGATTTTTACAGTTTGGTCCATAAGTAtatggacagtgacacaatctttgtaattttgcctctgtacaccaccacgttggatttgaaatgaaacagtcaATATGTGATTGATGTGTAGACTATCacctttaattcaaggggtttaacaaaaatattgcatcaaccatttaggaattacagccattttataCATCGTCCCcctcacaggctcaaaagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578168.1 lncRNA downstream 10261 83870 ~ 85921 (-) False LOC117597330
TU88992 lncRNA downstream 10296 84571 ~ 85886 (-) True LOC117597330
TU88997 lncRNA downstream 32894 62798 ~ 63288 (-) True G75037
TU88745 lncRNA downstream 50313 44484 ~ 45869 (-) True G74827
TU88739 lncRNA downstream 60739 35050 ~ 35443 (-) True G74822
TU88996 lncRNA upstream 224561 329943 ~ 330490 (-) False LOC113524562
TU89138 lncRNA upstream 267228 372610 ~ 374644 (-) False LOC113524348
TU89152 lncRNA upstream 311355 416737 ~ 417747 (-) True G75183
TU89173 lncRNA upstream 326137 431519 ~ 434836 (-) True G75195
TU89179 lncRNA upstream 375686 481068 ~ 481964 (-) True G75201
XM_026910582.2 mRNA upstream 6797 112179 ~ 125540 (-) True LOC113524368
XM_034304300.1 mRNA upstream 31452 136834 ~ 156279 (-) True LOC113524367
XM_034304295.1 mRNA upstream 33556 138938 ~ 141293 (-) True LOC117597326
XM_034304260.1 mRNA upstream 59368 164750 ~ 174359 (-) True LOC113524366
XM_034304299.1 mRNA upstream 91255 196637 ~ 201012 (-) False nms
TU88741 other downstream 51836 43731 ~ 44346 (-) True G74824
TU88709 other downstream 64143 18934 ~ 32039 (-) True G74815
TU89040 other upstream 56832 162214 ~ 162577 (-) True G75076
TU88975 other upstream 89649 195031 ~ 200718 (-) False nms
TU88976 other upstream 89649 195031 ~ 200325 (-) True nms
XR_004578164.1 other upstream 753022 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 756646 862028 ~ 864494 (-) False sox21b

Expression Profile