RNA id: XM_026910536.2


Basic Information

Item Value
RNA id XM_026910536.2
length 3196
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC113524329
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1103040 ~ 1112551 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGCTTTGGTGGAGTCAGACATGATGTCTGATGCAGATGTCACACAGACTGACAGCGCTGTCACTGAGGATTCTCTGACCGAGGCTGAGGAGAGGAATCAGAAGGACGTGGGGTCCAGTGCTCCGGTGGACAAGGAGAAGTCCAACCTGGAGGACAGAGTGAGGGAGTTGGAGGAACTGCTctgtgagacacacagagagtgtgAGATAAAAACCAAGGAGTGTGAGCGAGAGCGGGAGGCTCACAGTATCCTGAAGTTGAAGTATGATCAGATGACAGAAACTTTAGCGCACAAGGAGGAATCACTAAAGGTCTCTCTGGCTGATGCTGAGGAGAAATACAAGCTGGTGATCGAGTCCTGTGCTCAGCTGGAGTCTGACCTGATGTCCCAGGTGAACACACTGAAAGCCTCAGTGCAGCACCATGTGGAAGAACTCCTTGAGACACACAGGAAGTGTGACGAGATAACATCGGAGTATGAGCAGGAGCGAGAGGCCCACAGTATCATGAAGTCACAGTACGAACTGATGAGGGAAACTGTAAAACAGTGCGATGAGTTACTGAAAGAGTGTGAGCAAGAGTGCAAAGCTCATAGTATCCTGAAGTCAGAGTACAATCAGATTCAGGAAACTTTAACCCACGATGAGGAGTCACTAAACAACTTCCAGGTCTCTCTGGCTGAAGCTGAGAGGAAATATGAGAAGGCGATGAACATCAATGCTCAGCTGGTGAACGAGAACTCCAAACTGATATCCGATATAGACTTACTGCAAGGCtcaatgcagcagcaagaggaAGAGCTCAATGAGGCATACAGGAAGTGTggcatgatgatgatgGAGTATGAGCAGGAGCGGGAAGCTCGCAGTATCATGAAGTCACAGTACGAAGCGATGAAGGAATCTGTAAAATGGTGCGAAAAGTTACTAAACGACTTTAAGCAAGAGCAGGAGGCTCACAGTATCCTTAAGTCACAGTATGAAGAGATGACAGAAACTATAACACACAGAGAGGAGTCACTTAAAAACTTGCAGGTCGCTCTGGCTGAAGCTGAGAGGAAATACAAGCAGGCGATGGAGTCCAGTGCTCAGCTAGAGAAAGAGAACACCCACCTGATATCCGACTCGGACATACTGCAAGACTGTGTGCATGAGTTGGAGGAAAAGCTCTTTAAGATCCGGCGCAAGCATGATAAGTTAGCAAAGGATCGTCAGCAGGCAGGGAAGGCTTACAGCATCCTGCAGTCACAATACGAAGAAACATTAAAACAGCGTGACGAGTTACTAAAGgagtgtgagtgtgagcggGAGGCTCACAATATCCTGAAGACACAGTACAATCAGTTGAAGCAAACTTTTACCCACAATGAGGAGTCACTGAAGGAGGAGAAATACGAGCCAGTGATGGAGTCCAGTGCTCAGCTGGAGTCTGACCTAATGTCCCAGGTGAACACACTGCAAGCCTCAGTGCAGCAGCTGGAGGAAGAGCTCCTTGAGACACGCAGGAAATGTGACGAGATAACGACAgagagggagaaagagcaGGAGGTTCACAGTTTCCTGAATTTGCAGTACCAAGAGATGAGGGAAACTTTAAAACAGTGCAGTGAGTTACTAAAAAACCATCGCATAGCTCTTGGATCTGAGGAGCCTGTGGATCTGTGAACCCCAGGTACCTGCCAGTGGTGGTGTTTAACACCTGGATATCTTCTCATGCATGTGCGCGTATGACCTTTACCACAAAGTCATATGATGATGTACTACTTACTATAACTCGATGTAATAGTCACTATGGTTTCTGTAACCTACTGGCCAAGTGCCTACTAGCATTCTCTTTCACCCCTTCGTGATGTCGGTCCAACCAGCAGCCCCTGCACTTCACTGCCGGGCTCTGTGCAGTTTTCTCAATGTGGGTAGTGGGGGGGACTGGCACCATTTAGGGTGATTCACAGGGCGGATCAAGGGTGCTTGGGTGTTTGTTAGGGCCCTGGGAGCTCAGTTCTAATCACCTGTAACCCCGAGGTGGCCTGTCGGCCTGGGATCAATTCTGAAGCCTGGGTTCACTTCTCCAGGGTCTTGGGCCCAAAGACCAGTCCAGGAACGCAGCGCAAACTGTGTAGGGCCATTTTTTTGGGCAGTCATCACTATGTCTGCACTTGATATTGGGACAGCAGACATCAGAACATAATGGTGAAAGCACCAGCGATGAGATTCAGGGGTCCACCGGAGGCATGCGGTCCAGACTGAGCCCATCAGCTCTTATTAGCTAAGGATCTCACCACGGGGCAACTGTTAGCCTTGAAGCTTAGTGGTATCTGTGAGTTGCTTGATGCTGAACACTTACCAAATGCTGCCAGAGCCAATGATGAAAAGTGTTGCTTGGTTATTGGTTCATTTCCTGGTTAAAAATATTCCGGATGCAGTGGCAGACATACCGTCCTTGTGAGCTTCAGTTGAGCGCCACTCGGGGGGCTCGAACCTAGGGCTATCAGGAGGGCTTTATAGTAGTGGCTGAGCCACTGTTATTCAATGGAGGGAGTACATTCTGATCTATTAGTGCTGTTAGCTTCAGTCGTGTGAGGGGAAATTGGAGGAGAACACCACTCTAATCCCTTAGAGCTGTTGCAGCCAAGTGGGTGGGCCAATGGATGTTATTCGTAGGGGAACAAGAAAAACAATGTTTATGTTAGGTAATAACAGTAAGTACTGCATCATTGTTGTCTTATAACTTTGTGATAAAGGTCTTGGCTTATATGCACAAGAGAATATCCAGGTGTTAATCATACTGCCCCTGGTGGTAAGGAGGGGTGAAATGGAAGTACCACTAACATGCAGGTGCTCACGATAAAGGATGGATGCAATAAACACTCGATTTTATCAAATCTGCACTAGTTTCATCATCTTTGACAGAATTATTGAACttattacattaattttttaatcagCACATTCTTCTGTTAGACCACTTAATATTACTGCGTTAAATATTTTGGCTTACAAGACAGCTACAAGTTACTATTGATTTCAGCCATCCAAAATTTCTGAAGTTTCACTGCATCGTATGTGAAGTATAGAGAGAGATCCATGATATTGTCCACAATTCCACAACATGGAGGAGTTTATCTCCTTCGTTTTTAAAACTTTCCCTGGAGCACACAGTGTAGTCCTGCTCTTTTACACCATTCCTATAGCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89683 lncRNA downstream 21634 1081207 ~ 1081406 (-) True G75600
TU89682 lncRNA downstream 22685 1079923 ~ 1080355 (-) True G75599
TU89459 lncRNA downstream 173683 929147 ~ 929357 (-) True G75428
TU89460 lncRNA downstream 174074 927859 ~ 928966 (-) True G75429
TU89458 lncRNA downstream 176946 919896 ~ 926094 (-) True LOC113524338
TU89714 lncRNA upstream 23075 1135626 ~ 1140203 (-) True G75628
TU89729 lncRNA upstream 56908 1169459 ~ 1169693 (-) True G75640
TU89722 lncRNA upstream 96834 1209385 ~ 1215704 (-) True G75636
TU89753 lncRNA upstream 124670 1237221 ~ 1254096 (-) True G75663
TU89783 lncRNA upstream 193438 1305989 ~ 1306353 (-) True G75687
XM_026910528.2 mRNA downstream 145302 944319 ~ 957738 (-) True LOC113524324
XM_034304281.1 mRNA downstream 166072 920836 ~ 936968 (-) False LOC113524338
XM_026910548.2 mRNA downstream 166072 920836 ~ 936968 (-) False LOC113524338
XM_026910560.2 mRNA downstream 238433 860997 ~ 864607 (-) True sox21b
XM_026910542.2 mRNA downstream 269148 827281 ~ 833892 (-) True dct
XM_034304297.1 mRNA upstream 42568 1155119 ~ 1159338 (-) False rpl31
XM_034304298.1 mRNA upstream 42568 1155119 ~ 1159197 (-) False rpl31
XM_026911023.2 mRNA upstream 58158 1170709 ~ 1187499 (-) True lcp1
XM_034304768.1 mRNA upstream 158856 1271407 ~ 1282002 (-) True ints6
XM_034304769.1 mRNA upstream 158856 1271407 ~ 1281420 (-) False ints6
XR_003402538.2 other downstream 164837 938012 ~ 938203 (-) True LOC113524372
XR_004578164.1 other downstream 238433 858404 ~ 864607 (-) False sox21b
TU89432 other downstream 238546 862028 ~ 864494 (-) False sox21b
TU88975 other downstream 902322 195031 ~ 200718 (-) False nms
TU89684 other upstream 32746 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 59330 1171881 ~ 1187499 (-) False lcp1
trnas-uga_4 other upstream 117758 1230309 ~ 1230390 (-) True trnas-uga_4
trnal-cag_10 other upstream 118036 1230587 ~ 1230669 (-) True trnal-cag_10
trnaw-cca other upstream 140372 1252923 ~ 1252994 (-) True trnaw-cca

Expression Profile