RNA id: XM_026910542.2


Basic Information

Item Value
RNA id XM_026910542.2
length 2387
RNA type mRNA
GC content 0.50
exon number 9
gene id dct
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 827281 ~ 833892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAtccgagcacacacacacacacacacacacacacacatactgaagtggagttttttttatttccacacaCTCTGTTGAGTCTGTCTCTGTAAGGacaggaggatgaggaggatggtgCTGATGATGAAGGCCCTGGCGTGCTGGTGCGTGCTTTGCGCGGTGGTGCGCGGAGTCCGGGCGCAGTTTCCGCGCGCGTGCAGCACGGTGGAGGCGATCGAGTCGAAGCGCTGCTGCCCGTCCCCGAGCGCCGATGCCGAGGACGCGTGCGGCGCGCGCTCCGGACGCGGGGCCTGCGACGCCGTGCACACGGACACGCGGCCGTGGGGAGGAACGTACACGCTGCGCAACGTGGACGACCGCGAGCGCTGGCCCACCAAGTTCTACACGCAGACCTGCACGTGCTTCGGTAACTTCGCCGGTTACGACTGTGGCGAGTGTAAGTTTGGGTGGACGGGGCCGAACTGCGACGTCCGCAAGACTCCTGTGACACGGAAGAATATCATGTCTCTGAGTGTGGAGGAGAGGCAGATCTTCCTGGAGGTGCTGCAGCGTTCCAAACGCACCATACACCCTCAGTACGTCATCGCCACCGAGCACTGGCTCGGCCTGATCGATCGAGAAACCAACCAGACGCGCTTCAGCAACATCACCGTGTACGACCTGTTCGTCTGGCAGCACTACTACTCCGTGAGGGACACGCTGCTCGGTCCCGGACGGCCGTTCAAAGCCATCGATTTTTCCCATAAAGGCCCTGCGTTCATCACCTGGCACAGGTACCATCTGCTGAGTCTGGAGAGAGACCTTCAGaAACTGATTGGCGATCAAAATTTTGCTATCCCTTACTGGAATTTTGCAACCGGTGCTCAGGAGTGTGAAGTGTGCACTGATGACCTTTTGGGAGGAGAAGACCCCAGTGACCCCTCACTCATCAGCCCTAGATCACCGTTCAGTGACTGGGGAATCGTGTGTGACAGCTTGGACGAGTATAACCGTTTGGTGACGCTGTGTAACGGGACGAGAGAGGGACCTTTACGTCGCGGTCCGAAGAAAAGAGGCAGCATTGCTTTGCCGACGATGGACGACGTACGCAGCTGCCTCCAGTTACGAGACTTCGACAGGCCTCCATATTTTACCAACTCCACCTTCAGCTTCAGAAACGCACTGGAGGGTTTCGATAAAGCGGACGGAGAACTCGACAGTGCTGTGACGGGATTACACAACCTCGTCCACGACTTCCTCAGCGGCACAAACGCACTGTCCCACTCCGCCGCCAACGACCCCATCTTTGTGGTGTTACACGCCTTCACAGACGCCATATTTGAAGAATGGCTGCGCCGCTTCCCAAAAAACGATACTTATCCCGAAGAAATGGCTCCGATCGGCCATAACCGCCATTTTAACATGGTTCCCTTCTTCCCTCCGGTCACGAACGAGGAACTCTACATTCCCTCCGTCGAACTGGGCTACTCCTACGAGATCGACCTCTCCGatgCAGGTCAGTCCGCAGCCGCATTCGTTGTTGCCGGTTCCTGCCTCGCTCTCctcgtcctcatcctccttTTGGTTCTGTACACACGGCAGAGACACAGGCGCGAGTACGAGCCGCTCGTCAGCGCTGGATATGCAGCTGTGAAATACACCGAGGACGCGTGATTGAAAACGAAATTAAAAACTAGCGTGAACATTACTGCAGAAGACATTGCCGCAGTCTgatccatttttcttttccaaagtAGCAAAATAAGACtaacatgctagctaacatgtcTCATGCTAGCTAATTATCACACTATTCCTGGCGCTAATCTCACACTAACATTATGCTAATGTTACGCTAACTCCAGCCTAACTGCTTTAGCTCGTCTGCATGCTAGTTCTTAGAAGCGGATTTTTTTGGACACGAGTCTAATTCAGGAAGGTCATAAAAATGTGAATCATATTTacaagtgattaaaaatgtagaatGTAGTACctcattttgatttatttaccttctaaatgtttttttttttcattttagcacACGACAGTAATTCATAAgccattttgtttactttttattttgcttgttaaaggtgcagtctgtgATTTTGACAAATTGTTTCTACACTTGAATTAATCATATTGTGATTAACACCACCAATGTGCAGCCAATCTCACTGGATTCTGTGAATTTCagctttatatttacatttttttctgttaattaatgTCACAATGACGAGTGTGTGCTACATCAGTTGCTAATTATTAAACTTTGGTTACTCCATAAACTGCTCTATGACTCTGACTCCACTTTTTTGCATGGTCGTAGTACGTTATTAATGAGTAAATAATTCAATCAGCTAATGTTACTGTAACTAGCAATTTTACGAGtggtctaaat

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K01827 DCT; dopachrome tautomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89394 lncRNA downstream 54851 767361 ~ 772430 (-) True G75372
TU89390 lncRNA downstream 62726 764295 ~ 764555 (-) True G75369
TU89388 lncRNA downstream 64441 762640 ~ 762840 (-) False frmpd4
TU89386 lncRNA downstream 66443 760352 ~ 760838 (-) True G75365
TU89374 lncRNA downstream 106675 719505 ~ 720606 (-) True G75356
TU89458 lncRNA upstream 86004 919896 ~ 926094 (-) True LOC113524338
TU89460 lncRNA upstream 93967 927859 ~ 928966 (-) True G75429
TU89459 lncRNA upstream 95255 929147 ~ 929357 (-) True G75428
TU89682 lncRNA upstream 246031 1079923 ~ 1080355 (-) True G75599
TU89683 lncRNA upstream 247315 1081207 ~ 1081406 (-) True G75600
XM_034304257.1 mRNA downstream 61290 729592 ~ 765991 (-) False frmpd4
XM_034304255.1 mRNA downstream 64432 729592 ~ 762849 (-) False frmpd4
XM_026910507.2 mRNA downstream 69360 729592 ~ 757921 (-) False frmpd4
XM_034304254.1 mRNA downstream 69360 729592 ~ 757921 (-) False frmpd4
XM_034304258.1 mRNA downstream 70062 729592 ~ 757219 (-) False frmpd4
XM_026910560.2 mRNA upstream 27105 860997 ~ 864607 (-) True sox21b
XM_034304281.1 mRNA upstream 86944 920836 ~ 936968 (-) False LOC113524338
XM_026910548.2 mRNA upstream 86944 920836 ~ 936968 (-) False LOC113524338
XM_026910528.2 mRNA upstream 110427 944319 ~ 957738 (-) True LOC113524324
XM_026910536.2 mRNA upstream 269148 1103040 ~ 1112551 (-) True LOC113524329
TU88975 other downstream 626563 195031 ~ 200718 (-) False nms
TU88976 other downstream 626956 195031 ~ 200325 (-) True nms
TU89040 other downstream 664704 162214 ~ 162577 (-) True G75076
TU88741 other downstream 782935 43731 ~ 44346 (-) True G74824
TU88709 other downstream 795242 18934 ~ 32039 (-) True G74815
XR_004578164.1 other upstream 24512 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 28136 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 104120 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 311405 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 337989 1171881 ~ 1187499 (-) False lcp1

Expression Profile