RNA id: XM_026910562.2


Basic Information

Item Value
RNA id XM_026910562.2
length 1007
RNA type mRNA
GC content 0.42
exon number 5
gene id trappc2
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 412573 ~ 416058 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCCTGATGACGTAGCAGGAAGTAAAACGCGCCTGATGAGTGAAGGCGTTCAAGCAGCTTCGTAAGAAATGGAGATTTGTTATTAAACACAGCACagagttgtgtgttttgtgttttgtgttttattgtgcaaACTTTAAGAGGGaatcttttcatcttttcatcttgTTATTGTTAGTTGTTTGTTCGGAAGagagagagatgtccgGGAGCTTCTACTTCGTGATGGTGGGTCACCATGACAACCCGGTGTTTGAGATGGAGTTTCTGCCTCCTGGGAAACCAGAATCAAAGGACGATCATCGACACTTGAACCAGTTTATCGCTCACGCTGCACTCGATCTGGTCGATGAGAACATGTGGCTGTCCAACAACATGTACCTGAAAACGGTGGATAAATTCAACGAGTGGTTCGTCTCGGCCTTCGTCACCGCCGGTCATATGAGGTTCATCATGCTTCATGACGTCAGGCAAGAAGACGGGATCAAAAACTTCTTCAACGACGTTTACGATCTATACATCAAgTTTGCGATGAACCCTTTCTACGAAGTGAACACGCCGATTCGCTCCACAGCCTTCGAGCGCAAAGTGCAGTTTCTGGGCAAGAAGCATCTTCTGAGCTGATTGTGAAATGTTTCTATGAGTCGtaaatgtaatatacagtacatcagtTTCATTCGTCTCCACTGTTGATTTAAATATTCGCACTTATTCTGTACGTCTTCAAACCCGTGAGAAGCTTTTCCTCTGTTGTTTATTGTGAGTAGTGTTTACACATAGTGCctgctgtgtttaataaaaagtCTCAGCAGGTGGCGCTCTGACCGCATTTCCCTTCTCGCCGACACACGCCATCATCTTCAGCAGTGACATTTACACCTGATGAATCCGAATCGTGGACTTTAAACTGTAGATacggttttttttttacactgatcatttaaaaacattatgagCACGATCATCAGTTTATCAGTTTGttggataaaaatgtattattatatta

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K20301 TRAPPC2, TRS20; trafficking protein particle complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89138 lncRNA downstream 37929 372610 ~ 374644 (-) False LOC113524348
TU88996 lncRNA downstream 82083 329943 ~ 330490 (-) False LOC113524562
XR_004578168.1 lncRNA downstream 326652 83870 ~ 85921 (-) False LOC117597330
TU88992 lncRNA downstream 326687 84571 ~ 85886 (-) True LOC117597330
TU88997 lncRNA downstream 349285 62798 ~ 63288 (-) True G75037
TU89152 lncRNA upstream 715 416737 ~ 417747 (-) True G75183
TU89173 lncRNA upstream 15497 431519 ~ 434836 (-) True G75195
TU89179 lncRNA upstream 65046 481068 ~ 481964 (-) True G75201
TU89228 lncRNA upstream 145331 561353 ~ 561963 (-) True G75240
TU89341 lncRNA upstream 214422 630444 ~ 701572 (-) True G75332
XM_026910564.2 mRNA downstream 37951 372567 ~ 374622 (-) True LOC113524348
XM_034304262.1 mRNA downstream 57968 339589 ~ 354605 (-) True LOC113524317
XM_026910557.2 mRNA upstream 17265 433287 ~ 458683 (-) False gpm6bb
XM_026910558.2 mRNA upstream 19372 435394 ~ 458683 (-) True gpm6bb
XM_026910519.2 mRNA upstream 74458 490480 ~ 501207 (-) False fancb
XM_034304272.1 mRNA upstream 74458 490480 ~ 501200 (-) False fancb
XM_034304271.1 mRNA upstream 74458 490480 ~ 501200 (-) False fancb
TU88975 other downstream 211855 195031 ~ 200718 (-) False nms
TU88976 other downstream 212248 195031 ~ 200325 (-) True nms
TU89040 other downstream 249996 162214 ~ 162577 (-) True G75076
TU88741 other downstream 368227 43731 ~ 44346 (-) True G74824
TU88709 other downstream 380534 18934 ~ 32039 (-) True G74815
XR_004578164.1 other upstream 442382 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 446006 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 521990 938012 ~ 938203 (-) True LOC113524372
TU89684 other upstream 729275 1145297 ~ 1159269 (-) True rpl31
XR_003402581.2 other upstream 755859 1171881 ~ 1187499 (-) False lcp1

Expression Profile