Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026910563.2 |
| length | 911 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 5 |
| gene id | trappc2 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047599.1 |
| NCBI id | CM018545.1 |
| chromosome length | 32114633 |
| location | 412573 ~ 416058 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU89138 | lncRNA | downstream | 37929 | 372610 ~ 374644 (-) | False | LOC113524348 |
| TU88996 | lncRNA | downstream | 82083 | 329943 ~ 330490 (-) | False | LOC113524562 |
| XR_004578168.1 | lncRNA | downstream | 326652 | 83870 ~ 85921 (-) | False | LOC117597330 |
| TU88992 | lncRNA | downstream | 326687 | 84571 ~ 85886 (-) | True | LOC117597330 |
| TU88997 | lncRNA | downstream | 349285 | 62798 ~ 63288 (-) | True | G75037 |
| TU89152 | lncRNA | upstream | 679 | 416737 ~ 417747 (-) | True | G75183 |
| TU89173 | lncRNA | upstream | 15461 | 431519 ~ 434836 (-) | True | G75195 |
| TU89179 | lncRNA | upstream | 65010 | 481068 ~ 481964 (-) | True | G75201 |
| TU89228 | lncRNA | upstream | 145295 | 561353 ~ 561963 (-) | True | G75240 |
| TU89341 | lncRNA | upstream | 214386 | 630444 ~ 701572 (-) | True | G75332 |
| XM_026910564.2 | mRNA | downstream | 37951 | 372567 ~ 374622 (-) | True | LOC113524348 |
| XM_034304262.1 | mRNA | downstream | 57968 | 339589 ~ 354605 (-) | True | LOC113524317 |
| XM_034304265.1 | mRNA | downstream | 57971 | 322246 ~ 354602 (-) | False | LOC113524317 |
| XM_026910514.2 | mRNA | downstream | 57971 | 339589 ~ 354602 (-) | False | LOC113524317 |
| XM_026910513.2 | mRNA | downstream | 57971 | 339589 ~ 354602 (-) | False | LOC113524317 |
| XM_026910557.2 | mRNA | upstream | 17229 | 433287 ~ 458683 (-) | False | gpm6bb |
| XM_026910558.2 | mRNA | upstream | 19336 | 435394 ~ 458683 (-) | True | gpm6bb |
| XM_026910519.2 | mRNA | upstream | 74422 | 490480 ~ 501207 (-) | False | fancb |
| XM_034304272.1 | mRNA | upstream | 74422 | 490480 ~ 501200 (-) | False | fancb |
| XM_034304271.1 | mRNA | upstream | 74422 | 490480 ~ 501200 (-) | False | fancb |
| TU88975 | other | downstream | 211855 | 195031 ~ 200718 (-) | False | nms |
| TU88976 | other | downstream | 212248 | 195031 ~ 200325 (-) | True | nms |
| TU89040 | other | downstream | 249996 | 162214 ~ 162577 (-) | True | G75076 |
| TU88741 | other | downstream | 368227 | 43731 ~ 44346 (-) | True | G74824 |
| TU88709 | other | downstream | 380534 | 18934 ~ 32039 (-) | True | G74815 |
| XR_004578164.1 | other | upstream | 442346 | 858404 ~ 864607 (-) | False | sox21b |
| TU89432 | other | upstream | 445970 | 862028 ~ 864494 (-) | False | sox21b |
| XR_003402538.2 | other | upstream | 521954 | 938012 ~ 938203 (-) | True | LOC113524372 |
| TU89684 | other | upstream | 729239 | 1145297 ~ 1159269 (-) | True | rpl31 |
| XR_003402581.2 | other | upstream | 755823 | 1171881 ~ 1187499 (-) | False | lcp1 |
