RNA id: XM_034304412.1


Basic Information

Item Value
RNA id XM_034304412.1
length 1947
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC113524666
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1554942 ~ 1566787 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTGTGGGTGTGTCTAGACTTCAAAATGTTCCATTTAGTAATACTTTTTGGGATGGTGATGCAATGCTGGACCCTTCCTCTGCAGAATTCCTCCGCAGTGCATGGAGCAAAAACGAGGGCAAAACGAGGGTATTCAGAGGAGTTTCTGTATCCAGATGAGATGAATCCAATGGACAAGATACTTGTAGCAAACATTGggATGTCGCGTTTTCGGGGCTATGCCGTTCGAGAAGGTGACATCGCGAGTTCTGGTGTGAGGAGCGCCATTTCATGTCCAAACCAAAACTGCCTCTGGCCAAAATCGGTGGATGGATTTGTTTACGTTCCTTACACCATCTCTCCTCTCTATGaTAATATGGACCGGATCACAATCGAGATGGGAATGCTGGACATCTCATCTGCAACGTGTGTGAAATTTGTGCCACGTACGCATCAAGCTGACTTCGTCGATATCCAGCCTAGATTTGGGTGCTGGTCATTCTTGGGCAGGGTGGGAGGACCACAGCCACTCTCACTGCAGACTCCGGCGTGCATGTGGTCAGGCGTGGCATCTcatgagctcatgcatgtgcTCGGCTTCGTTCACGAGCAGTCACGCTCTGATCGCGACCGCTACGTCACCATCCTGTGGGAAAACATCATCGAGGGTCAAAGGCACAACTTTAAAAAGTACGAGACGAACAATTTAAACACCGTATATGATTATGACTCTGTGATGCACTACGGGAGATATGCTTTCTCAGAAGATGGATTACCAACTATCATCCCTAAACCAGATCCGAACATTCCTATTGGCCAGCGTGATGGACCGAGCCGACTAGATATTCACAAAATAAATCtgctgtacaactgtgGTGGCCTCGTCTGAACAGAAGCTCTGGGATAAAACTTGAAGTCACTTTATTAAAGTAGCAGCTCAGTCACTATTATTGTATATTCCAGGCTATAAgtcactttttattttgcactgtaGCAGATATTGCAACTTAGAATGCaaagctttttaaattttttttacacatccaACCAATTCATGACTTATTAtcacatttgttaaaaaaagcacaacttctgcagcaaaatatttttaataaataaatatttctactATATCAATGCATAGTTGCAAAAGCTTttccaaaagcttcagcttATGCGTCTTGAAGTAGTTCATGGTGGTGGATTTtgaggcatgtttttggatcattgtccttgTTGTGAATCTCTTTTTAGCTTGACGATATCAAATTTGCTTCcagaatttgctgatatttactggaATCTATTTTTCCATCTACCTGTGCAATGTTTTTTGTGCCACTTGCTGCCACATAACCCCAGTGAATAATAGATCCAGCCCATGCGTAACAGCTGGCGAAGTGCTCTTTTCATTAATTACTGCTCTTATTTTCAACAAACACTGTATTGCATACACTGGACATTGAATTTTGTgctttccttctgatgactcttccatgcataTCATGTTTGCGCAAGCATTGCTGCACAGTAGAACAGCGCACCATCACTCCTGTGTCAGTGAAACCTTCTTGCAGTCCTTGCTGTCGATTGGGGATTTTGCGTTTCCTTTCTCGCCAGCATTTCTGCAGTTCTGTCTGGGAGTTTTCTTGATCTTCCAGATCTTGCCTTTGACTTTCACATTTCCCCTTAACTGCCGTTTCTTAGTGATGTTTTACAGACTGGAAATTGCAACCTGGAAGCACTTTTTATAGCCTTTCTCTGCTTTGTAGGCATCAGTTAGCTTCATTTTCTGACCCTCAGTCACCTGCTTAAAGGAGCCAATGGTTGTTGAATGTGGGGACGTATAAGGATGTGACGTATAAGCCAGTGTGACTTATTGTCTGGAAAATACTGCACGCATATTACACAGCTACCAGGTTACTGCAATTAACTGcctatttattatcattttttaaggCTATTTA

Function

GO: NA

KEGG:

id description
K08076 E3.4.24.21; astacin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89841 lncRNA downstream 87043 1467662 ~ 1467899 (-) True G75740
TU89840 lncRNA downstream 99655 1454999 ~ 1455287 (-) True G75739
TU89838 lncRNA downstream 121715 1433022 ~ 1433227 (-) True G75737
TU89837 lncRNA downstream 140765 1413842 ~ 1414177 (-) True G75736
TU89834 lncRNA downstream 158420 1396297 ~ 1396522 (-) True G75734
TU89924 lncRNA upstream 26679 1592071 ~ 1592274 (-) False htr2aa
TU89942 lncRNA upstream 90981 1656373 ~ 1656848 (-) True G75814
TU90012 lncRNA upstream 157189 1722581 ~ 1722799 (-) True G75875
TU90038 lncRNA upstream 235880 1801272 ~ 1819183 (-) True G75889
TU90040 lncRNA upstream 235880 1801272 ~ 1817910 (-) False G75889
XM_026911012.2 mRNA downstream 2507 1529825 ~ 1552435 (-) True si:dkey-230p4.1
XM_026910995.2 mRNA downstream 150151 1396684 ~ 1404791 (-) True esd
XM_034304180.1 mRNA downstream 215720 1320263 ~ 1339222 (-) True rubcnl
XM_034304700.1 mRNA downstream 239609 1306954 ~ 1315333 (-) True dhrs12
XM_026911019.2 mRNA upstream 26563 1591955 ~ 1596479 (-) True htr2aa
XM_026911002.2 mRNA upstream 50508 1615900 ~ 1624049 (-) True med4
XM_034304840.1 mRNA upstream 157865 1723257 ~ 1747031 (-) True mlphb
XM_026919622.2 mRNA upstream 292870 1858262 ~ 1871493 (-) True cops8
XM_034304738.1 mRNA upstream 296761 1862153 ~ 1863790 (-) True trim63b
TU89874 other downstream 25429 1529070 ~ 1529513 (-) True G75770
trnak-uuu_2 other downstream 83381 1471489 ~ 1471561 (-) True trnak-uuu_2
trnat-agu_4 other downstream 106678 1448191 ~ 1448264 (-) True trnat-agu_4
trnaw-cca_4 other downstream 140203 1414668 ~ 1414739 (-) True trnaw-cca_4
trnal-caa_2 other downstream 240516 1314314 ~ 1314426 (-) True trnal-caa_2
trnal-caa_7 other upstream 3353 1568745 ~ 1568857 (-) True trnal-caa_7
trnat-agu_6 other upstream 72993 1638385 ~ 1638458 (-) True trnat-agu_6
trnar-ucu_5 other upstream 73371 1638763 ~ 1638852 (-) True trnar-ucu_5
trnat-agu_7 other upstream 84661 1650053 ~ 1650126 (-) True trnat-agu_7
trnar-ucu_6 other upstream 97128 1662520 ~ 1662609 (-) True trnar-ucu_6

Expression Profile