RNA id: XR_003402581.2


Basic Information

Item Value
RNA id XR_003402581.2
length 1861
RNA type misc_RNA
GC content 0.50
exon number 15
gene id lcp1
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1170709 ~ 1187499 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAAGTGTCACCTTTCCCTAGCAGATTACCTTATAAAGCCATCATGAGCAACGTTCCTGTTTTCGCATGATTGTCACTTCCTTCCTCTCATTTGAATAGATCTGTCGTTCCTCACTGCTCTGCACACTGCTTGTGTAAAGCagagtaacagagagagagaaagagaaagagacggaCCTCACGCTTACCTTTCTCAGaaaagatgGCCAGTACAGGACCAATTTCAGCTGATGAGATAGAGGAGCTGCGGGAAGCCTTCAGCAAAGTCGATCTGGACTCTAATGGCTACATCAGCACAGATGAGCTGAACGAGCTGTTTAAAGTGGCTAACCTTCCTCTGCCGGGATACCGAGTTCGCGAAATCGTCCAGGAGCTCAGTCAAACCATGGACCAAGACAAGGACGGCAAGATCACGTTCGACGAGTTTGTAAAGGTCGTTCACGGACTGAAGAGCTCCGAGGTGGCCAAAACTTTCCGCAAGGCCATCAACAAGAAGGAGGGGATCTGTGCTGTAGCGGGAACCTCAGAGCAGACTGGCACACAGCACTCGTACTCAGaggagGAGAAGGTGGCATTTGTAAACTGGGTCAACAAGGCCTTAGAGAAAGACCCCGACTGCAAACACGTCCTCCCCATGGACCCAAGCTCAAATGATCTGTTCACAGCTGTGGGAGATGGCATTGTActctgtaaaatgatcAACTTGTCTGTCCCCGATACCATCGATGAGAGAACCATCAATAAGAAGAAGCTCACACCTTTCACCATCCAGgagaatCTAAATCTGGCTCTGAACTCATCTTCGGCTATTGGCTGCCATGTTGTGAATATCGGAGCAGAGGACCTGAAGGAAGGCAGGCAACATCTGGTTCTTGGTCTTCTGTGGCAGATCATCAAAATCGGCCTGTTAGCTGATATCGAGATCAGCAGGAACGAAGccttgATTGCTTTGCTGAGGGATGGCGAGAATCTAGAGGATCTGATGAAGCTTTCCCCTGAAGAACTGCTCCTGCGATGGGCCAACTACCATCTGGAGCAGGCCGGCTGCCCAAAAATTAACAATTTCAGCTCTGATATtaagGATTCCAAGGCTTACTACAACATCCTGAACCAGGTGGCTCCGAAAGGAGATGAAGAAGGCATCCCTCCCATCCCTATCAACATGTCTGGACTGAGGGAAAAGGATGACCTGAAAAGAGCAGAGCTCATGCTGGAGCAGGCCGATCGCCTCGGCTGCCGTCAGTTTGTCTCAGCGACTGATGTTGTGCGAGGAAATCCTAAACTTAACCTGGCCTACGTGGCCAACCTTTTCAACAAATATCCTGCTCTGAAGAAGCCAGAGAACCAGGACATTGACTGGAGCTCCATCGAGGgTGAGACCAGGGAGGAACGCACTTTCCGTAACTGGATGAACTCCCTTGGAGTCAATCCTCGTGTCAACCATCTCTATGTggacCTGGCTGATGCTCTGGTCATCTTCCAGCTCTATGAGAAGATCAAAGTTCCTGTAGATTGGGACAGAGTAAACAAACCTCCATATCCCAAACTCGGCAGCAACATGAAGAAGCTGGAGAACTGTAACTACGCAGTGGAACTGGGGAAGAAAGAGGCGAAGTTTTCCCTGGTGGGAATCGCCGGGCAGGACCTGAACGAGGGCAACCGCACACTCACTCTCGCTCTGCTCTGGCAACTCATGAGAGGTACACTCTGAACATCCTGGAAGAGCTTGGAGATGGGCAGAAGGTCAACGATGACACCATTGTCCAGTGGGTGAACAACATGCTCAGGGAAGCCGGAAAGAACACCATCTCAGGTTTCAAGGATGGATCCATAAGCAGTAGCTTGCCAGTGCTGGACCTCA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89729 lncRNA downstream 2188 1169459 ~ 1169693 (-) True G75640
TU89714 lncRNA downstream 31678 1135626 ~ 1140203 (-) True G75628
TU89683 lncRNA downstream 90475 1081207 ~ 1081406 (-) True G75600
TU89682 lncRNA downstream 91526 1079923 ~ 1080355 (-) True G75599
TU89459 lncRNA downstream 242524 929147 ~ 929357 (-) True G75428
TU89722 lncRNA upstream 21886 1209385 ~ 1215704 (-) True G75636
TU89753 lncRNA upstream 49722 1237221 ~ 1254096 (-) True G75663
TU89783 lncRNA upstream 118490 1305989 ~ 1306353 (-) True G75687
TU89812 lncRNA upstream 178883 1366382 ~ 1367066 (-) True G75713
TU89818 lncRNA upstream 187887 1375386 ~ 1377189 (-) True G75719
XM_034304297.1 mRNA downstream 12543 1155119 ~ 1159338 (-) False rpl31
XM_034304298.1 mRNA downstream 12684 1155119 ~ 1159197 (-) False rpl31
XM_026910536.2 mRNA downstream 59330 1103040 ~ 1112551 (-) True LOC113524329
XM_026910528.2 mRNA downstream 214143 944319 ~ 957738 (-) True LOC113524324
XM_034304281.1 mRNA downstream 234913 920836 ~ 936968 (-) False LOC113524338
XM_034304768.1 mRNA upstream 83908 1271407 ~ 1282002 (-) True ints6
XM_034304769.1 mRNA upstream 83908 1271407 ~ 1281420 (-) False ints6
XM_034304700.1 mRNA upstream 119455 1306954 ~ 1315333 (-) True dhrs12
XM_026911029.2 mRNA upstream 119456 1306955 ~ 1315330 (-) False dhrs12
XM_034304180.1 mRNA upstream 132764 1320263 ~ 1339222 (-) True rubcnl
TU89684 other downstream 12612 1145297 ~ 1159269 (-) True rpl31
XR_003402538.2 other downstream 233678 938012 ~ 938203 (-) True LOC113524372
XR_004578164.1 other downstream 307274 858404 ~ 864607 (-) False sox21b
TU89432 other downstream 307387 862028 ~ 864494 (-) False sox21b
TU88975 other downstream 971163 195031 ~ 200718 (-) False nms
trnas-uga_4 other upstream 42810 1230309 ~ 1230390 (-) True trnas-uga_4
trnal-cag_10 other upstream 43088 1230587 ~ 1230669 (-) True trnal-cag_10
trnaw-cca other upstream 65424 1252923 ~ 1252994 (-) True trnaw-cca
trnal-caa_1 other upstream 70643 1258142 ~ 1258256 (-) True trnal-caa_1
trnan-guu_14 other upstream 99554 1287053 ~ 1287127 (-) True trnan-guu_14