RNA id: XM_034304700.1


Basic Information

Item Value
RNA id XM_034304700.1
length 1590
RNA type mRNA
GC content 0.47
exon number 10
gene id dhrs12
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1306954 ~ 1315333 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCGGAAGTTGACCAGCGCGACTGTTTGTGTAACAGCAGCGTTTCCTTTCCAGCTGAGCTAATTTTCAACTCATGCGTTGCTGTAGATAGGGCTAGTCTTTGAGCTGTAGATCTACACCACGTGCTGTGTGTTATGGTCATGCTTATGAAACGGTAGATAaggcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatatcaGTTATATCAGAAGGCAGCAGCATGTCTTTTTACAGAAACGCGGTTTGGTTTGTGAAAGGTCTGCAGGAATACACCAGGAGCGGCTATGAAGCGGCTGCAAAACATTTCGTAGCTTCCGATCTGGAGGTCGATGTAAGCGGCAGGTCTTTTATCATCACAGGCGCCAACAGCGGGATCGGGAAAGCAACCGCTGTGGAAATAGCTAAACGAGGTGGTACGGTGCACATGGTGTGTCGGAATAAAGATCGCGCGGACGAGGCCAGGACACACATTGTGGAGCAGAGCAAAAATGAGAACGTGCACGTGCACATTGTGGACATGTCGAGCCCCAGAGGATTGTGGGAGTTTGCCAACTCGTTCACTCAGAACCACAGCGTGCACGTgctgATCAACAATGCTGGGTGTATGGTGAATCAGCGAGAGTTGACCGAGGATGGCTTGGAGAAAAACTTTGCCACCAACACActtggtcTTGCCACAGGAACGTTCATCCTGACCACAGCGCTGATTCCTGTGCTGAAAAAGTCCCAGGACCCAAGAGTGATCACGGTATCGTCAGGAGGAATGCTGGTTCAGAAACTCAACCTTGATGATCTGCAGTTTGAAAAAGGCACTTTCGATGGAACCATGGCTTACGCACAGaacaagAGACAGCAAGTGATAATGACAGAAGTTTGGGCGCGTCAGCACAAAGAGATTCATTTCTCATCCATGCACCCGGGCTGGGCCGACACaccagCGGTGCAGTCGTCCATGCCGGATTTTCACGccaaaatgaagaacaaattACGCACAGAAGCACAAGGAGCCGACACCGTGGCGTGGTTAGCTGTGGCTGACGCGGCCGCGAAACATCCCAGCGGCCTCTTCTTCCAAGACAGAACACCAGTGTCCACACACCTGCCTCTGGCCTTCACCAGATCCTCTGCCTCTGAGGAGGACGAGCTGATGAACAGGCTGGAGCAACTCAGCGCACAGTTCAAGCCGCGTCTTACTTCAGGACTCTAACCAAAGAACGAACTCGTCCAGATGCAAAACCTGAGTCTGTGTTTGTATGAGCAGTAATCAGAAATATGGAGGTATGGAATGTGCCATCACAAAGCTGTAATGCTTCCTGGCCCATTTCTCAAACACTTAATTCTCACTTAATTCTACTCGGATTTATTTTCCTGTTCAGCACACTGACTTACAGCCTTTATTAACCATAAAACTTACTCCATGTCAAACTTACAATCTAATATGAAGTTGTTTACATTTCGAGTTATTGAGTTTAttgtgaaaattaatcaaacatatattaaagtatatctgaaaatatatacattaaaatcaTGTGCTGTTGAAGTAcgtaacagatttttttcttttttc

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11168 DHRS12; dehydrogenase/reductase SDR family member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89783 lncRNA downstream 601 1305989 ~ 1306353 (-) True G75687
TU89753 lncRNA downstream 52858 1237221 ~ 1254096 (-) True G75663
TU89722 lncRNA downstream 91250 1209385 ~ 1215704 (-) True G75636
TU89729 lncRNA downstream 137261 1169459 ~ 1169693 (-) True G75640
TU89714 lncRNA downstream 166751 1135626 ~ 1140203 (-) True G75628
TU89812 lncRNA upstream 51049 1366382 ~ 1367066 (-) True G75713
TU89818 lncRNA upstream 60053 1375386 ~ 1377189 (-) True G75719
TU89826 lncRNA upstream 69525 1384858 ~ 1385522 (-) True G75727
TU89831 lncRNA upstream 77446 1392779 ~ 1395138 (-) True G75732
TU89834 lncRNA upstream 80964 1396297 ~ 1396522 (-) True G75734
XM_034304768.1 mRNA downstream 24952 1271407 ~ 1282002 (-) True ints6
XM_034304769.1 mRNA downstream 25534 1271407 ~ 1281420 (-) False ints6
XM_026911023.2 mRNA downstream 119455 1170709 ~ 1187499 (-) True lcp1
XM_034304297.1 mRNA downstream 147616 1155119 ~ 1159338 (-) False rpl31
XM_034304298.1 mRNA downstream 147757 1155119 ~ 1159197 (-) False rpl31
XM_034304180.1 mRNA upstream 4930 1320263 ~ 1339222 (-) True rubcnl
XM_026910995.2 mRNA upstream 81351 1396684 ~ 1404791 (-) True esd
XM_026911012.2 mRNA upstream 214492 1529825 ~ 1552435 (-) True si:dkey-230p4.1
XM_026911013.2 mRNA upstream 239609 1554942 ~ 1566787 (-) False LOC113524666
XM_034304412.1 mRNA upstream 239609 1554942 ~ 1565392 (-) True LOC113524666
trnan-guu_16 other downstream 11184 1295696 ~ 1295770 (-) True trnan-guu_16
trnat-agu_2 other downstream 13010 1293871 ~ 1293944 (-) True trnat-agu_2
trnan-guu_15 other downstream 15294 1291586 ~ 1291660 (-) True trnan-guu_15
trnat-agu_1 other downstream 17154 1289727 ~ 1289800 (-) True trnat-agu_1
trnan-guu_14 other downstream 19827 1287053 ~ 1287127 (-) True trnan-guu_14
trnaw-cca_4 other upstream 99335 1414668 ~ 1414739 (-) True trnaw-cca_4
trnat-agu_4 other upstream 132858 1448191 ~ 1448264 (-) True trnat-agu_4
trnak-uuu_2 other upstream 156156 1471489 ~ 1471561 (-) True trnak-uuu_2
TU89874 other upstream 213737 1529070 ~ 1529513 (-) True G75770
trnal-caa_7 other upstream 253412 1568745 ~ 1568857 (-) True trnal-caa_7

Expression Profile