RNA id: XM_034304216.1


Basic Information

Item Value
RNA id XM_034304216.1
length 4069
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC113540088
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2234810 ~ 2246620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTTAAGCTCCACCTCTCAATCTAACCCTGAAGATCTGAGCAGAAGTTTCCTCGGCGCCGTTTTTTTCACCTCGCACCGAAAGcctttttaaaatttggtgTCCCAACTGTACCTGAGAATGTGAGGGCTGTTGATGAATCACGGACTGAGGTGGATGATGATATTTTTGAGTTTTGTAGTTAAAGATTGGAGTTCTCACCATAAGACATGGTGCAgACTTGGAATCTGACTCTCCACAAGCCTCTCCTGTGCAGTTAAATCGGTCCTTGTCATCATCCATTGACTCCACTGACTCACGGGATACACTATTGAAGAAAGCTCTTCCAGTAAACGAATGAGGCTAGATGATGAAGCTAAACAGtGGAGCAATATCAGAAAGGAGTTTTTCAGAGAAAAATTGCAAGGAGTTTGAAGTTATCATCATCTACAGTGCATAATATCATCCAAAGATTCAGAGAATCTGGAACAATCTCTGTGCGTAAGGGTCAAGGCCGGAAAACCATACTGGATGCCCGTGATCTTCGGGCCCTTAGACGGCACTGCATCACATACAGGAATGCTACTCTAATGGAAATCACAACATGGGCTCAGGAATACTTCCAGAAAACATTGTCGGTGAACACAATCCACTGTGCCATTCGCCGTTGCCGGCTAAAACTCTATAGGTCAAAAAAGAAGCCATATCTAAACATGATCCAGAAGCGCAGGCGTTTTCTCTGGGCCAAGGCTCGTTTAAAATGGACTGTGGCAAAGTGGAAAACTGTTCTGTGGTCAGACGAATCAAAATTTGAAGTTCTTTTTGGAAAACTGGGACGCCATGTCATCCGGACTAAAGAGGACAAGGACAACCCAAGTTGTTATCAGCGCTCAGTTCAGAAACCTGCATCTCTGATGGTATGGGGTTGCATGAGTGCGTGTGGCATGGGCAGCTTACACATCTGGAAAGGCACCATCAATGCTGAAAGGTATATCCAAGTTCTAGAACAACATATGCTCCCATCCAGATGTCGTCTCTTTCAGGGAAGACCTTGCAttttccaacatgacaatgcagGACCGCATACTGCATCAATTACAACATGATGGCTGCATAGAAGAAGGATCCGGGTACTGAAATGGCCAGCTGCAGTCCAGATCTTTCACCCATAGAAAACATCTGGCGCATCATAAAGAGGAAGATGCGACAAAGAAGACCTAAGACAGTTGAGCAACTAGAAGCCTGTATTAGACAAGAATGGGACAACATTCCTATTCCTAAACTTGAGCAACTTGTCTCCTCAGTCCCCAGACGTTATAAAAAGAAGAGGGGATTCCACACAGTGAAACCTGATGGGGAGCATATAATAAAAGAATACAACCGAACTAAGTCTTTGGGGGACGAAACGAGGAGGAAAATGTTTAACATCCTGGCAGCtgacattacagaaaaaaatggTACATCACCCCCAAGGCAGGTGAAAGAAATATATGCCAGAGGAATTGTGGCTTTGTTCCCATACCTCAGTGACCCCTTCTCCAAAAATGGCTATAGCGTTACTATGATGGTGAGAGTGGCACTGGGTACTTGGCATGGACAATCAAAACTATACAGAGAGGCTGGGCTAAAGAAGGAGGCTGAGCTAAAGAATGTGATTCCTACATTCCCCCCTTCGATGTTTCGAGGACAAGGATCATCTGCTGAGGGGGTGTCAGGTGGACCAATTGTAAGACGGGAGTCGGAGTTTACTCCGGAGACTGTCTTGAGTGAGGATGAATGCAAGGAAGCAGTTGCATTCATGAACCATTCTGCTGATGAGGACACAGtcaagaagaaaatgaaactgACATTTGATTATTGGAGCAACATGGTTCTTGACCCTGTGCAATCAAGTGTTTGGAACAGTGACCTCTCttctatactactactactgttgcATCTGATACCACTTTCTGCCCAAGCTCGGAAGAGACCAGGAAAGGTGTCTGCTTCTCAAGCAGAGAGACATCTTATTGTCTTcaagaaggttttttttgtagttttcttttctttatataacaTATTAATGATAATTCTCTACAATTAGCTTGGTTTTCTCAGAGTGGAACAAACATTGAGGACATCTTCGAGACATCATTGCTAGTGCTCAACCCTATCTCCTGGCTGTGGCAGTGCTGGAGAGGTGGCCATCTGTATTGTTAAAGTCAAATAAGAGCACATTGGATATGTGTGCGTCTGCTGTTGCACCTCTAAATGTTGCTGGATTAAGGCAGTCTGCAATAAATGGTTTTGTTTCGTCTATGGAGGAAATGGTTTTTGAGATTCATAGTCAGGCCCAGGATACAGCTTTGCTTTGTCTGTCTTCACAGGACACTGCTACTAAAAGGAAAATAGAAAATTCATTTCAAAACTTGGAAAATCcatttactttgttaaattCTGAAGCCAAATGAAAGAGACTCTTTACAGAGAAATCGGGAACTGTTGAACCAAGCGAAATAGTGCTTGGAGATTTGACGGCAGGAGAAATAAAACCACAGGAACATATGATCAAGTTGTTGTAACTGATAAATTTGCTTATATTCCCGTTTTAGAAACACTAAAGgcaattttaaaagtaattccTTATTTTATAcagatgaaaaattaaaaagaatacaCAAAATTGGGTGCAATGTATTTTACATTAAGGAATTTCCCCCCAGTTTTTAACTCCTCTTTGGTGAATATTCATTTATGTTCCCTCTTTCATGCACAGGATATTAAGCTCTATGGTTTTAATTCTATAATTGAGCCTCTAACTATAAAGTGATTGAGATTGAGGGGGTTAAGAATCCAGGATCTGGAAGTTGTGTTAGGGGTACGATTGTTCAAGTCACTGAGGATAATCTTGGATTACATAGTTTGTTTGGGTTTCTGGAGTCATTTGGGGCTCGATATTGCTGTCGTTTCTGTCTTCTTGAGAAAGATCGCTTTCAGTCTGTGTTCTCTGAAGATAACCCTGAGGTTGTGCTAAGAATAACTGAGATGCATGCTCTGCATTGTGAAACTTTACAAACTGATTCTACACTACCTCATGTTTATGGTGTCAAAAGGGTGTGTTTGTTAAATTCACTCAAGTATTTCAAAACAGCCAACAATTTCGCTGTGGATATAATGCACGACATTCTAGAAGGAGTTGCTCAGCTAGAGGTAAAACTTGTTCTGCAGTACATTCACCATAATTTTTTGAGTGCTGATGGTCTTGCTGGTAGAGTACATGCTTTTGACTATGTTTACAATCAGCAGAGGAACTGTCCTCCAGTGGTCAAATTGTTTGATGGAAGCAATGATTCGGGTTTAAATGTCATCCAATCTTGGTGCCTGTTGCACAGCATGCCCCTATTATTTGGTGATTTAGTGGAGAGAGATGATAAATACTGGCATCTTTTGCTTTTACTTCTGCAGATTGTTAAAGTCGTATTTTCACCAGTTCTAACAGAAGGCATGACCATTTatcttaaacatttaataattgaACATTGCCAGCTATTCAAAAAATTATTTCCTGAAAGAAATCTTTTGGCGATGTACTGGGAGTCTTTTAGCCAGTACAGATTGTCTCTTGGCCCAGGAAAGATGGTGGAACTCAAAGGTGAACTTAAAGGTAGCCAAGAGATGGCTTCCAAACTAGGAGTGGCAATGTCAGAACTTGTCTATTCTGTAAAGTGGATCAAACACCATGGCAAAGAGTATCACGCTGACTTTATTATCTGTCCAGATGTAGCATGTGAGATGCCAGTGTTTTGTAAGATCAATACTATTGTTATGAAAgatgaaaatgtactgttatgtgGAACACTGATGGAAACTATATGTTTTGATGACCATTACCATGCATTTACAGTCAGACTGTATCCAGACAGAGTTTTAAAGGTAGTGAATGTTAACGAGCTGTGTTATTTCAAACCATTTGATCTTCAGAAATATGGTACAACAGATTTTGCACTGCGTATAGTGCCGTATTGCCAGTTCATGCAGACATGATGTATTTTTGTGCATGTAAGTGTATGTTTCTTGAGTCTGacagtgttttaataaatgttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90223 lncRNA downstream 120211 2114190 ~ 2114599 (-) True G76013
TU90126 lncRNA downstream 288634 1945973 ~ 1946176 (-) True G75947
TU90099 lncRNA downstream 309557 1913131 ~ 1925253 (-) True G75926
TU90097 lncRNA downstream 317372 1911196 ~ 1917438 (-) True G75925
TU90277 lncRNA upstream 25258 2271867 ~ 2274639 (-) True G76057
TU90288 lncRNA upstream 54112 2300721 ~ 2300940 (-) True G76060
TU90329 lncRNA upstream 203110 2449719 ~ 2450949 (-) True G76093
TU90634 lncRNA upstream 284045 2530654 ~ 2530992 (-) True G76333
TU90626 lncRNA upstream 309897 2556506 ~ 2559152 (-) True G76325
XM_034304321.1 mRNA downstream 154397 2069547 ~ 2080413 (-) False LOC113546994
XM_026947133.2 mRNA downstream 154400 2069547 ~ 2080410 (-) False LOC113546994
XM_034304322.1 mRNA downstream 156054 2069547 ~ 2078756 (-) True LOC113546994
XM_026947134.2 mRNA downstream 160691 2069547 ~ 2074119 (-) False LOC113546994
XM_034304747.1 mRNA downstream 170512 2047779 ~ 2064298 (-) False LOC113547075
XM_026936246.2 mRNA upstream 234985 2481594 ~ 2522383 (-) False LOC113540058
XM_034304201.1 mRNA upstream 236421 2483030 ~ 2522385 (-) True LOC113540058
XM_034304837.1 mRNA upstream 420247 2666856 ~ 2680900 (-) True il1rl1
XM_034304836.1 mRNA upstream 420247 2666856 ~ 2678131 (-) False il1rl1
XM_026945240.2 mRNA upstream 437899 2684508 ~ 2698756 (-) True ifngr2
TU90190 other downstream 185425 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 431165 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 560237 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 560625 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 572201 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 556278 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 557939 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 692712 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1566870 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2593351 4839960 ~ 4844879 (-) True G77283

Expression Profile