RNA id: XM_026936728.2


Basic Information

Item Value
RNA id XM_026936728.2
length 3388
RNA type mRNA
GC content 0.39
exon number 5
gene id gypc
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 3892480 ~ 3923274 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGAggaggaaacagaaaaaaaaacacacacacacacacacacacaaaacttcaGATGCAGCTCATCAGACTTCGCAACACACCGGTAGAAAAAGATCTCAGAGTATCAGGACTTGAGCAGGCAGTTGTGTCTTTTTGCTCGCTGTAACAGGAAAAGTCACTTCCTAATGTGCTCAGCTGTCTAAGGAAGCATTTCCTGTGCAGGAGGAGGAGATTGTGCACGCAGTCAGACAACTTGTTGCAAGGCAATTCAGTCAAAGTTGctgTCCCCTTCAATCTTTCTCACGGACATTTCCTCACATGCTTCTGAGGCCCGAGTCAATGAGAATGGCATCTAATGCAACTGAAGGCATAACGGCGGAGCTCGAAAATGTGGGTGCAAGCCAAGCCACCGGGGGAGCCATTGATGACTCAGACAGCAGCACTGTGATAATTGGTGTCGTCATTGTTGCGGTAGTCCTGGTCATCATCTGCCTGTTCTTCGTGCTCCTTCGCTACATGTACAAACACAAGGGCACCTACCACACCAACGAGGCCAAAGGCAGCGAATTCGCCGAGACGGCAGACGCAGCTCTACAGGGAGATCCGGCTCTTCAAGACGCCATGGACGAAAGCAAGAAGGAGTATTTCATCTGAGTCCTAGAGAGACTGAATTCAAAGCCATAGCTTAAAATGGTTTTCAACCTGaacaaattttacattttgatgaGACTCCCATCTGATCAAAGTTGGTCACATGGTTGAGTTCACCGCCAAAGCTTATACACtcttatattcattattatggAACATACAGAAATTTAGAGAAGACATTGGGTAAATATTTTGCCTAGCAAACCGGATTCGGAGGAATAGGTCACCCAAGGATGTTAAACTGAAAGTACACATCTATTGGTTGAGAAAATCACAAAGAGAAATTCTGAAACAAATCAGCAGGTAAATGAAGGCAGAGATGGAATATGAAATGACTATCAAATAGCCAAAGAGAAGAAATGGCAGGAAGTGACTATAATGCTGTGGACAAAAGAGGTGTCAGTATCTTTTGCATGCAAATAAGATGAAATCTTTAGATGTGTTCCAGCTTATTGCTGACAATCAGTGTTGTTTAACTATGCATTCGCTAAGGAGCCAGACAGTGACACATTGATTGTAtatattattgctttttttttttttattttgtacaccAGCATGCTggattatgaaatgaaatagtAACTTTGAGGTTAAAGTGCACAAAGCCatcttttaattaaagtttataGTCCTTCTATTTCCATAAACATAACTGAGCAAATTAACATAATCCTAAATAAGACCTACTTGGTACTTGGTTTTAAGACTTTTGCAATTCACTGCTTGAAATCTGCGATGCTTGGGCATGACCAGGTGCTTTATATATTCCTTTCCTCTGGGTATATGCACTGCCCAGGCCTGAAATGTAGCTATTTTTGATTACAGCtcgaaatgcatgctcagtggGCCCTGAAAAAGTTAAGTGAATGCCATTTACTGAGTGTCGAAGCATTTTGGTTGGACCCGGGCAGTTAGGATGCTTCGGTTCACTTcaaaattcatcctgctgctgttGTCACCTGTCACATCAGCCAAACACGGTTGGCAACCAAACATGTCCGATCTGAACCGTGACACCACCTCCAGCATGTTTTACAGATGAGGTTGTGTGCCATGGATCATGAAGTGTCTGTTCCTTCACGCTTTCCTCATTCCATCACTCTTCTGCAGATTCATTTTCACCTCAAATGTGCATAAGCCCCCGTCCTATAATTCGCTGACCACCTGAATTTTAACTTCATagtttttgttacatttcaAATCTAGTGTGCTGGAcaacagagagttaaacacacacacacacacacacacacacacacacacactaattataTCTACATTTACAGTAAGTGGAAGTCTTAATAACAGAGATTCAGGTACTGGTTATTTTGGACTCTTGAACAAATTCATTTATAACTGTTCAATCAAAATGCAATATAGAACATGAAAAAAACCTGTGATGTGATTGGAAAAGCTTAGAAATGATAGTGGGGCCATATACAGGGTCTAGTTTCTCGTTTAACCCTTTAAGCCCCTGGAGCTATCTGTGCATCCTGACGTACTGCTTACTCTTATAACTGCATACCTGTTCCATTAGTTGCACTGTACTTACTGAATCATTTATAGTAGCtactgaataatgtgctttaataTGAGCCAAATAATAAGCCAGCTTTTATAAATGGCaagatttttattaaacaagCTATTGGCAAAGCTTTTTTGTGGGCAAAATGAAAGCTACACATCTGTCTTACTACCAGTGTTTTATTACCTTGATATTAGTTAATATTGTAAGTGTTAGAAGACCATTTGTGCCTTTAAGCATTAGAAATATCCAGATCAGTGATCACTGGGTAACTGGGATCAAGATTAATGAAGGGATAAGAAAAGGATGTGTAATGAAGCATACAAAGACTGTGAAAACTACCAcatatacagatagatagatagatagatagatagatagaaacttCACTGATCCCAAGGGATACTGCAGTGTTATAGTTGTggtaaaaagacaaacattcaCAGATAGCCATAAATATAGTAAGACAGCACAGTGCAAAGTGCAAAAACATTGAATgcaaatctataataataataataataataataataataataataataatagtgcaaatgtgctcTAGTCCTGGTTCTGTCTTGACAGTAAGGTGACTCAAAGGTGACAATATGCAGTGCAGGTGAGAAtgactttcctttttttttttttcaaccttacCTTTAAGTTAATTTCAAACTGACCTCCACATGCCTCCAGTCACAAAGGATTAGCCTAGTCACGATGAATGCCATGTGACTCTGATGTTTTTCATGTGGATCTtaaccaaataaaaatgtgcatgcATAATGCATAATCGTTACTGATGCATTACAATGTGACTGAGTAGccctccactccaaccctcctCACAGTGCAGTTATACTCCTGTCCCTACAGTAAAACTGTACTCAAAAGCAAACCTAGCAAGTCACAGATTTCTGTGATTAATTAATAGCCTCAAGGATACAGTTGGAAAATAAGCCCAAAGCTCCAAATCACACATAACCTTCTAACCTTCTCATACGAATTTCCATAATTAACAGAAACTTGCCcaaggttttctttttcttttttttttattttatggaaaACATGAAGAAGGCCTGCGCTGCTGTTGGGTAGCAGGCAGGTTATACTGTTAGAACCAAAGTTGACACTTTAACAATTACTCTTGCCAAAACAGCAACGTGATGAAGAAGCAGATAGTCTGtgcttgaaaataaaatatatttttcttccaTCTA

Function

GO: NA

KEGG:

id description
K06576 GYPC, CD236; glycophorin C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91019 lncRNA downstream 40273 3851396 ~ 3852207 (-) True G76658
TU90966 lncRNA downstream 76444 3809192 ~ 3816036 (-) True faima
TU90968 lncRNA downstream 86883 3786956 ~ 3805597 (-) False faima
TU90910 lncRNA downstream 297069 3592818 ~ 3595411 (-) True G76570
TU90786 lncRNA downstream 925947 2965266 ~ 2966533 (-) True G76462
TU91051 lncRNA upstream 14520 3937794 ~ 3938000 (-) True G76682
TU91057 lncRNA upstream 44599 3967873 ~ 3968077 (-) True G76688
TU91180 lncRNA upstream 82420 4005694 ~ 4005908 (-) True G76794
TU91182 lncRNA upstream 84163 4007437 ~ 4007795 (-) True G76796
TU91199 lncRNA upstream 119660 4042934 ~ 4043196 (-) True G76813
XM_034304686.1 mRNA downstream 76421 3810514 ~ 3816059 (-) False faima
XM_026934130.2 mRNA downstream 108087 3770234 ~ 3784393 (-) False parp14rs1
XM_026934120.2 mRNA downstream 108087 3770234 ~ 3784393 (-) True parp14rs1
XM_026934140.2 mRNA downstream 108087 3772777 ~ 3784393 (-) False parp14rs1
XM_034304801.1 mRNA downstream 147098 3634589 ~ 3745382 (-) False dnah7
XM_026936716.2 mRNA upstream 80452 4003726 ~ 4126493 (-) False cntnap5a
XM_026936707.2 mRNA upstream 80452 4003726 ~ 4126493 (-) True cntnap5a
XM_026910834.2 mRNA upstream 366798 4290072 ~ 4294136 (-) True sfrp2
XM_034304750.1 mRNA upstream 409621 4332895 ~ 4333842 (-) True LOC113535176
XM_026927891.2 mRNA upstream 490769 4414043 ~ 4469641 (-) True tmem163a
TU90967 other downstream 76444 3813479 ~ 3816036 (-) False faima
trnas-cga other downstream 953078 2939321 ~ 2939402 (-) True trnas-cga
XR_004578243.1 other downstream 1086617 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other downstream 1086617 2804548 ~ 2805863 (-) False LOC113541352
TU90190 other downstream 1843095 2049023 ~ 2049385 (-) False LOC113547075
TU91765 other upstream 916686 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 1408310 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 2399879 6323153 ~ 6324680 (-) False LOC117597343
TU92645 other upstream 2605772 6529046 ~ 6564571 (-) False G78058
TU92652 other upstream 2605772 6529046 ~ 6565037 (-) False G78058

Expression Profile