RNA id: XM_026938258.2


Basic Information

Item Value
RNA id XM_026938258.2
length 2760
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC113541336
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2745336 ~ 2760206 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttaaattcagacattatttctttaaatcatGTGAGTGTGTCCCAGTGATatatagagattttttttattgcaaaaattGCCAAAAGTCAATCTATATTCCAGGCTGCCAGTTACTAGAATGTTACTATCAAAGCATGAGATGCTGCTGCTGGATGTAAACAACCAATTTTAAACCATGAGTTTTGAGAGTGTGTATATGCACTTAATTGGAGACTGAACAGTattgttcattaattcattcatctttagtaagttCAGAATGTATTCAGACTCGGTCATTGTGGTTTTCTGCCCCAGTCTGAGGTCTTGTGAATTCTGGAAGCAGGACTGCTTTGTGTTTGGGTCTGTTTATCCTTTCCTCAGTTCTGACCAGTCTCCCCATTCGTGCCAATGAGAAGAACCCCATAGcttgatgctgccaccaccatgcttcactgtagggatggtatTAGCCAGTTGATGAGCAGTACCTGGTTTTTGCCGTACATAGCACTTGGAGtttaatttttgtcttattaaacaAGAGAATCTTGTCTAATAAGTGTCTGCCTTTTACCATAAAGGCCTTTATGGTAGCATTTTTGAGATGATTGTCTTTCTGGCAGGTTTTCCCAAATCTGTGGAGGACTTCTTAAGCTCTGTTTGAGTGGCCATTGGGCTCTTGGTCGCCTTTCTGTCTAAGGCTCTTGTAGCTCAGTTACTGAGTTTGGCGGGTTGGAAGTGTCCTAGTGGTTCCAAACTTCTGTTGCACTATGATGGAGCCCACTGTGCACCTGGGAACATTCAAAGCTTTAGAAATAGTTTTATACCCTTGACCAGTTTGATGTCTTCACACAAGTTGATTGTGGAGAGGTACGGAAAGTTTCTTGAACTTCATTGCTTGTGGGGACCTTATACATACAGGTGTGTGCATTTCTAAATCATGTCCAGTCAATTAGATTCACCACAGGTAGACTCCAGTCAGGTTCCAAAGACATGGCAAGCTATTCAATGCAAACAGGATGCACACGAGTTCAATTTGGAGTGCCTTAGCCAAGGGTCTGAACACTTATCTAAGAGAGATTTAGGTCTTTCATTTTGAATAAGTTTGCAAAgatttctaaaaacatgtttttgccaTGTCATTGTAGATTCTTGTGTAGATGAATGtctaaaaagtacatttaatccAGTTTAACTTAAATCTATAACTCAATAATGTGTACAATAACTGATGGGGTTGGAATAATTTCAAAACTCaatgtattttattgcattGACCATGCCATAAAACATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGAACAAGCAGGAGCTTTCACTGACCAAGCAGGAGCTTTCACTGACCATGCAGGAGCCTTTGGGTGCTTTCATTGTAAAGTGCACTGTTCACTCCCGTCTCCCCAAAATGTAACCATCGTCTCCTTTAATCTGGAGCACAAGCTCACGTGGACACCAGGTCCTGGCACAGCAGCCTTCACACACTTCAGAGTGCAGAGCTATAATCAGAAGAGGAAGCTCTGGATTTCAGTGAAGAGCTGTTCTGATGTACAAATTGGCGAGTCATGTGATTTGACCAAATCTTTCAAGGAAATGTTCGGTGTTTATCAAGCCCGAGTGCAAGCATTTAATCAGGTCCAGGAATCCAACTGGACCACATCGAAATTCTTTACTCCCCTGCTGGACACAACTCTGGGTCCTCCACTTGTGTCGCTGACCGGTTGTGGAAACTGCCTCCTCCTGAAACTCAGTCCACCAGCCAGTGTGGAGCAAAACCATGACCCACTGACCAACTTTTTTCAAGAGTACACTGTCACTGTGTCCAGGACTAGAGACAAAGCACAGTTTGGTATGAAGGCATCCAATGGAGAGAATTTGATCAACTACCTAGAGCCGGGAGTGGAGTACTGCATCACGGCCACTGCAGTAACAAGCTTTAAAAACCTTGCTCTTCCTTCTGAACCTCACTGCACCTACACAAGTCCACAGCCGTTCAACACAGtggccatgtttttgaGCGCACTGTGCGCAGTCTTCCTCTTGGTGTTGCTCCTCTGTGCAGCTCTGAACTACACCGGCCAGCTCGGTAACCTCCACACACCACTcccaagagctttagtgagttTCTTACCTTTGGTGGAAAGAAGGTGGGAAACTTAAGAAGTGCTGTTGCGTTATTGATTTTAACACGGACATGATCCAACACCCGTTTTATTAAGAAACAGCGTTCATGTAAGGGGTGAGGTGCtcttaatgaaaaataatgaaatatgaagCTTTTGCTGATCTCTCTCTGCAAAACATTCCatgtttctctcattctttgtGTGGAGGGTCTTCCAAACTCATAAGACACAGAAGAGGCTGCTATTTCAGAATTTTTGTCAAGTAGAAGATGTTAGAAAAGGTTCTTTGGGGGACTTATTTTTGATACTTTATTTTGGCTTTTCTTTAGTACAAGAacattgtaaaaataaagaactaaaaaaattagaagacaaacattattttcatcAATTATTTTCAGTCAGTAGCTTcctacatcatacatcatacagaGTCATTCCAATTTAAGGCCAATGTTGCAGTAGGTGGGTTGCATTACATTTAGATATATCAGTTGGAGTGTTTTTGTCATAGAAACTTTTTGCTGTGAATGTAATCAATTTCTCCAAagttaacataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90626 lncRNA downstream 188418 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 216578 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 296621 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 446630 2300721 ~ 2300940 (-) True G76060
TU90277 lncRNA downstream 472931 2271867 ~ 2274639 (-) True G76057
XR_004578280.1 lncRNA upstream 133171 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 154195 2914400 ~ 2917047 (-) True G76400
TU90778 lncRNA upstream 175876 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 205061 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA upstream 205190 2965395 ~ 2966533 (-) False G76462
XM_034304181.1 mRNA downstream 4350 2734185 ~ 2743220 (-) False crfb4
XM_026938245.2 mRNA downstream 4355 2734184 ~ 2743215 (-) True crfb4
XM_026945208.2 mRNA downstream 15419 2714012 ~ 2732151 (-) True LOC113545730
XM_026945215.2 mRNA downstream 35292 2704360 ~ 2712278 (-) True LOC113545737
XM_026937180.2 mRNA upstream 45 2760250 ~ 2772389 (-) True LOC113540598
XM_026938205.2 mRNA upstream 15635 2775840 ~ 2799002 (-) True crfb1
XM_026938224.2 mRNA upstream 15635 2775840 ~ 2799001 (-) False crfb1
XM_026938233.2 mRNA upstream 15635 2775840 ~ 2790715 (-) False crfb1
XM_026938295.2 mRNA upstream 40801 2801006 ~ 2805856 (-) False LOC113541352
TU90190 other downstream 698185 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 943925 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 1072997 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 1073385 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 1084961 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 42682 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 44343 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 179116 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1053274 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2079755 4839960 ~ 4844879 (-) True G77283

Expression Profile