RNA id: XM_026938287.2


Basic Information

Item Value
RNA id XM_026938287.2
length 2098
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC113541352
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2801006 ~ 2805863 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTGTCTAAGCCACAGTGAGTCAACATTCATTGCCAATGAGACTGTGTGAGGGGCCTCGGGAAGgggagacagagggaggagagatggaaaagaggggaaggagagaggaagaaagggaGAGTGAATAAGAGAGCTGAAGCATGAAGCAGCCACGATTGTAAAGTCCTCAAGACTCAACAGctaatggaaaaaatattactGATGGGATTCAGTGTTATGTGAGCAGTTCACAGCAGACGCTTCATCAGTGAAGCTAATGTAAACTGGACTCCGGATCAGGATGTAGGCCTGGCATGGATGCCAAAATGCTGCTGTCTTGCTTATGGCACATCTTGTGTGTCTTCCTCCCATTAAACTTTGTGGAAACTCAGCATCCCCTCCAAGCCAACATCACACTAGTGTTCGACAGCTCGGACCATACTGACCGCTTATGCAGCTGCAGCTGTGCGACGGCGGTGCGCAGTTGTGATGAAGCTCTTGCCAATCTGATGTGCAGCTGTGGCACCGTGTGGCGCTCGGCTCTGTCGCCTGGCACCCTGGAGGCGGAGACGCTGACGGTGTGGGCGTGGCAGCCCTGGGTGCTGAGGGAGCTGCTGAACGGCAGCAGGGTTCCAGAGCTGCAGCTGTCTCTGTGTAGCCCTGCCTCATTTCTCGGACCCTCTCAATATCTCACTATTGTGGGTCTGAGGAAGCTTCAGATCTCCAATAATGGGGTGCCATATCACAAGAGCGAAAAAGTCCTGAACTTCGGACTGAACGTGCCGGATGGGAATCTCAGCGTTGCATTTTTAGACCTGTGGTCACTGAACAATCACTTGAAGGCCTACAGTGTCATTGGACCACCGCTGCAGATGCTTATGCAGCATTTTCCTTACCTTCAGCAAGCCAATATAAAGATTACTGACCTAGAAGAGATCCACAAGCCATCCATCTTaacttttatttactaaattGAGGCTCTAAACAGAGCCTCTACAGCCAATCAGGTTTTCTTATGCTGAAGAACATGGAGAAAGAGCTTCTATCTACACTGGACTAACAATATAATTATAACTGTCCAACCATGCCCTACACCTTATTCCCTACAAATccactgcagtgcattgtgggactTCATAAGTGCACTTGATATTTCTTCACTTGTTTCCTCAGGCATAGCTACAAAACAGAACCCAAGCCCCCCAATACACTGCACCTATTAGTGAACAGTGTGCAGTTTCAGACATGTGAGACTATTGCAAAGGAACATTTCCTCCAGTTTCTACCAAACCGcaacaacagaaaaagaaataggCAAGAAGGCACTCAGAATCACTTCCTTTTTCCTTTGAGGCTGTACATTCAGATAAACAACATTTGTGGCATTTTTCTGGCACCAGTTAACTTCTGAAACTTTTTTGCCATTAagctttaaatttattattttttttaaacatttttgtggaatcaattccatttttaaaattttttttttaaaattcagttcaGGTCCTGGAGTTCTCATAACCAGAACTGCTTCCTTATTTTCTCGGATTGAACCAGATGTATAAATTCTTTTGAACTGCAGCTGTAAGACATTTTGTAGAATATTTATTCCTGTGTGTCATGATAGATATATTAACGTACTAGCATTGCAATGTTTAGCGATcagtaaaacataaaacattaattgCACCTTATCATTCTAAAACTTGTCCTCTAATACTACTAGCACTACTAGCacttaaataaatcaacaaaaaatTGTATATGAAGAtgtctgaatgaaaatattaaaaatagctTTCAAAGTCCAGgctttaaataaaaaggaattttATAGAGAATTGTGCTTGGCATTGCAACATAGTGCATATCCGGTGACGAATATTGCTCAGAGTATTATTGTTAGCATGTCTGGATGTAAATAGAGAAGACTGATGTACAAAATTGGCACATAAATTgaacactattattattattattattattattactattattattattattataactgaatataatgagaaaatattctgtaaatCTTTGAAGCATATGCTGAGTAACTGACTAAAGGCCTAACTACAGGCTtgaataaatgtcaaataaatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90615 lncRNA downstream 47200 2684516 ~ 2753806 (-) False ifngr2
TU90626 lncRNA downstream 241854 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 270014 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 350057 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 500066 2300721 ~ 2300940 (-) True G76060
XR_004578280.1 lncRNA upstream 87521 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 108545 2914400 ~ 2917047 (-) True G76400
TU90778 lncRNA upstream 130226 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 159411 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA upstream 159540 2965395 ~ 2966533 (-) False G76462
XM_026938205.2 mRNA downstream 2004 2775840 ~ 2799002 (-) True crfb1
XM_026938224.2 mRNA downstream 2005 2775840 ~ 2799001 (-) False crfb1
XM_026938233.2 mRNA downstream 10291 2775840 ~ 2790715 (-) False crfb1
XM_026937180.2 mRNA downstream 28617 2760250 ~ 2772389 (-) True LOC113540598
XM_026938258.2 mRNA downstream 40801 2747570 ~ 2760205 (-) True LOC113541336
XM_034304223.1 mRNA upstream 17961 2823816 ~ 2829821 (-) False tyw5
XM_026942700.2 mRNA upstream 17961 2823816 ~ 2829565 (-) True tyw5
XM_026937158.2 mRNA upstream 113451 2919306 ~ 2920007 (-) True c5h2orf69
XM_026939466.2 mRNA upstream 122966 2928821 ~ 2953801 (-) True nabp1a
XM_026932051.2 mRNA upstream 138419 2944274 ~ 2960366 (-) True cavin2a
TU90190 other downstream 751621 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 997361 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 1126433 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 1126821 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 1138397 1662520 ~ 1662609 (-) True trnar-ucu_6
trnas-cga other upstream 133466 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1007624 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2034105 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 2525729 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 3517298 6323153 ~ 6324680 (-) False LOC117597343

Expression Profile