RNA id: XM_026942700.2


Basic Information

Item Value
RNA id XM_026942700.2
length 1686
RNA type mRNA
GC content 0.46
exon number 8
gene id tyw5
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2823816 ~ 2829821 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCACCAAAATACACAAAGGCCGAGTCCCAAGTAGCTACATGTTCTCTATATGAGTGCACTATTAAGGGTATGAAAATGGCGGAAGctacaccctacatagtgcactacgtcTCTGTTTGGGATTGACCCAAGCTAAAGAAAGCGTGAAAGAAGAGGTGAAGGAGTGAAGAGGTAGatttctgtgtatttctgtatgGAATGTCAGGGGAGAGTCGCAGTGTCCGTCTTCACTGATGTGGACAAGGAGCTTTTCAGAAAGGAGATCTACCCTctgAGAAAACCGGCGGTGCTCAAGGGAGTGCCTTTAGGACCATGCCTGGAAAAATGGACCGTGGATTACCTGGCAGCAAAGGGAGGTGACCGGGAGGTCAAAGTTCATGTGTCGTCTGTTCCTCAGATGGACTTTCTGCATAAAAATTTCATATACAGGACATTACCGTTTGACAAGTTTGTCCAGAGAGCTGCAGCAGAAGCAGAGCATGAAGAGTTCTTCATTAGTAAGGATGAGAGTTACTACTTAAGATCGCTCGGAGAGGACGCTCGTAAGGAGCCTGCTGACCTGAAGAAGCAGTTCCCTGACCTGGCACAAGACTTCCATATACCTCCGTTTTTTGAGCCTGAACGATTTTTCTCCAGTGTTTTCCGCATCAGCTCACCTGGCTTGCAGCTATGGACACACTACGACGTAATGGACAACCTGCTGGCTCAGGTGACTGGGAGAAAGCGTGTCGTTCTCTACAGCCCCCAAGATGCCTTACACCTGTATCTGTCAGGTGATAAGTCTGAAGTTTTGGATGTCGATTCTCCAGATTTGGAACGATATCCAAATTTTGTGAAAGCATGTCGATATGAGTGTATTTTAGAACCAGGCGACCTGCTCTTCATCCCAGcCCTTTGGTTTCACAATACATTGGCTCTTCAGTTCGGCATTGGCGTCAATGTGTTCTGGCGCCACCTGCCCCTGGACAGCTACGATAAGAAGGACCCGTACGGGAACAAGGACCCGGTGGCAGCGACGCGGGCCCTTCAGGCCCTGGAGCGGGCGCTGGGAGCTCTGGATGAGCTACCAGCTGAATACCAGGACTTTTACGCTCGCCGCATGGTGCTGCGTATTCAAAGCCGGGCGTACTCCAAAGAAACATAACACAAGAGTGCAGCTGGGTTCTCTCACCTACAGTAATGTACCAGAcgaaaaataaagacagagacTACAGTTGCTGATCATGATTGTATATGGGACATTTTATTAAAGTCACCGTGATCcctgaggaaaaagaaaactttgTGAAGTTGTTTGTCGTTTGTCTGTCATTGCAGATACATATTTATACATGGTAGAGGTCTGCACtggactgtttttgtttttgccccCTCCTTTTTGCCTCCTTGGTAAAGCCAAGCAAGTTTATTTAGGATTGTAATTTTCACCCTTTAAATTTTCGCTTTTTAAATAAGGTGGCACTGTGTGTTCCATGCCAGGGCAGTATAGTGACCGACAAAGCTCTGAGACATTGAGACTGACACGCCTGTTGACATAAATATCTATCATGTCACATTACTATCTATAATGTGTTATACAGTACTGAGGAACAAACTTAGACACATGCAAGGAAATGCTGTaaagtaaagatgccttcaaaataatACAGTTTCTCCATAAGCAGCAAAGAAAATACTATAAAAG

Function

GO:

id name namespace
GO:0031591 wybutosine biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0000049 tRNA binding molecular_function
GO:0005506 iron ion binding molecular_function
GO:0042803 protein homodimerization activity molecular_function

KEGG:

id description
K18066 TYW5; tRNA wybutosine-synthesizing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90615 lncRNA downstream 70010 2684516 ~ 2753806 (-) False ifngr2
TU90626 lncRNA downstream 264664 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 292824 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 372867 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 522876 2300721 ~ 2300940 (-) True G76060
XR_004578280.1 lncRNA upstream 63811 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 84835 2914400 ~ 2917047 (-) True G76400
TU90778 lncRNA upstream 106516 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 135701 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA upstream 135830 2965395 ~ 2966533 (-) False G76462
XM_026938295.2 mRNA downstream 17960 2801006 ~ 2805856 (-) False LOC113541352
XM_026938287.2 mRNA downstream 17961 2801006 ~ 2805855 (-) True LOC113541352
XM_026938205.2 mRNA downstream 24814 2775840 ~ 2799002 (-) True crfb1
XM_026938224.2 mRNA downstream 24815 2775840 ~ 2799001 (-) False crfb1
XM_026938233.2 mRNA downstream 33101 2775840 ~ 2790715 (-) False crfb1
XM_026937158.2 mRNA upstream 89741 2919306 ~ 2920007 (-) True c5h2orf69
XM_026939466.2 mRNA upstream 99256 2928821 ~ 2953801 (-) True nabp1a
XM_026932051.2 mRNA upstream 114709 2944274 ~ 2960366 (-) True cavin2a
XM_034304728.1 mRNA upstream 139115 2968680 ~ 3060237 (-) True tmeff2a
XM_034304802.1 mRNA upstream 804427 3633992 ~ 3745380 (-) True dnah7
XR_004578243.1 other downstream 17953 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other downstream 17953 2804548 ~ 2805863 (-) False LOC113541352
TU90190 other downstream 774431 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 1020171 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 1149243 1674484 ~ 1674573 (-) True trnar-ucu_7
trnas-cga other upstream 109756 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 983914 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2010395 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 2502019 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 3493588 6323153 ~ 6324680 (-) False LOC117597343

Expression Profile